Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2439g00003 ATGGATGGGGATAACGATCTTAACATGCGTAATTGGGGTTACTATGATGCCACAACCTCCTTTAAGAGCAATCTTGGGTTACAGCTAATGTCCTCCATGCCCGAAAAACCTCTGCTTGGAGGACGCAATGCTGCAGTTTTATCTGGCACTGGCACTGGCACTGGCACTGTCACTGGCACAACAAGTGCCCCTTTTCACCATAGAGACTTTGGGATGCCCCCTATGGATTATGCTTGGATTAATCACAGAGACAAGTTTATGAATATGATACCCACAAACCCCAATTATGCTGTTGTTCCTGAGACATCTTCAGCACATCAAATGCAAATGATTCAACCACCTGAATTGTCCAAGGAAGAAGAACCAACTGAAGATCCACCTGTTGAGAAGGTCAACGGAACTAGTAAGAAAAGACAAAGGCCCAAGGTTCCCAAGGTGCCCAAGGTTCCCAAGGTTCCCAAGTCACCCAAGGCAAAGAAGCCCAAAAGAGGGTCTCGTGTGCCAAAGGATGAGAATACTCCTTCAGTTCAACGAGCTAGGACATCAAAGAAAACTACTGAAATTTTAATAAATGGGATCGATATGGATATCTCCAGTATTCCTATACCTGTTTGTTCATGCACTGGGTCATCTCAACAGTGTTATAGATGGGGCTCCGGTGGGTGGCAATCAGCATGTTGTACAACAGGTATATCAATATATCCTTTACCCATGAGTGCCAAACGGCGTGGAGCGAGGATAGCTGGAAGAAAAATGAGTATAGGAGCATTTAAGAAAGTTTTAGAGAAACTTGCAGCCGAGGGTTATAACTTTTCTAATCCAATTGATTTAAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACTATCAGGTAG 882 0.4399 MDGDNDLNMRNWGYYDATTSFKSNLGLQLMSSMPEKPLLGGRNAAVLSGTGTGTGTVTGTTSAPFHHRDFGMPPMDYAWINHRDKFMNMIPTNPNYAVVPETSSAHQMQMIQPPELSKEEEPTEDPPVEKVNGTSKKRQRPKVPKVPKVPKVPKSPKAKKPKRGSRVPKDENTPSVQRARTSKKTTEILINGIDMDISSIPIPVCSCTGSSQQCYRWGSGGWQSACCTTGISIYPLPMSAKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2439g00003 293 SMART GAGA_bind_2 1 293 IPR010409 -
Gabi2439g00003 293 PANTHER - 1 293 IPR010409 -
Gabi2439g00003 293 MobiDBLite consensus disorder prediction 170 185 - -
Gabi2439g00003 293 MobiDBLite consensus disorder prediction 117 136 - -
Gabi2439g00003 293 MobiDBLite consensus disorder prediction 137 163 - -
Gabi2439g00003 293 MobiDBLite consensus disorder prediction 102 185 - -
Gabi2439g00003 293 Pfam GAGA binding protein-like family 1 293 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2439g00003 Gabi-Chr2439 34934 36527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2439g00003 5 293 BBR or BPC Transcription factor family AT2G01930 50.836 6.84e-94 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Gabi2439g00003 GAGA_bind 1.8e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2439g00003 - - qsa:O6P43_005244 442.195