Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2439g00002 ATGGAAGGAGGATCAGAGAACTACAATTGTGCATATAAAGAGTGCTTGAGAAACCATGCAGCCAGCCTGGGGAGCTACGCCACCGACGGGTGTGGCGAGTTTACGGTGGAGGAGATGTCAGCGGGAAGCCTACAATGCGCTGCGTGTGGGTGCCACCGCAACTTCCACCGGAAAGTGAAGTACCCGGCGGTGACTACGGGTGGGAGAGGGGTGATGAACTACAGTAACAACCGTGAAATGATGGAGTACGAAGGAGGTGATGAAGGGATGATGAGGGGGGTTCATCAGCAGGTTGAGTCAGATGATAAGAACGGGAAGAAGCGGTTCAGATCAAAGTTCACAACAGATCAGAAGGAGAAGATGCTTGCTTTTGCAGAGAAGATTGGTTGGAAGCTTCAAAGGAAGGATCTGGATGATGAGATTGAGAGGTTCTGCCGTGGCATTGGGGTGAGTAGGCAAGTCTTCAAAGTTTGGATGCATAACCATAAGAACTCTTCCTCCTCTTCTTCTGCTTCTACTGGCAATATCTCCTCTCTCACTCAGTAA 546 0.5 MEGGSENYNCAYKECLRNHAASLGSYATDGCGEFTVEEMSAGSLQCAACGCHRNFHRKVKYPAVTTGGRGVMNYSNNREMMEYEGGDEGMMRGVHQQVESDDKNGKKRFRSKFTTDQKEKMLAFAEKIGWKLQRKDLDDEIERFCRGIGVSRQVFKVWMHNHKNSSSSSSASTGNISSLTQ 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2439g00002 181 MobiDBLite consensus disorder prediction 162 181 - -
Gabi2439g00002 181 Gene3D - 92 170 - -
Gabi2439g00002 181 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 12 59 IPR006456 -
Gabi2439g00002 181 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 165 - -
Gabi2439g00002 181 SUPERFAMILY Homeodomain-like 100 164 IPR009057 -
Gabi2439g00002 181 Pfam ZF-HD protein dimerisation region 10 59 IPR006456 -
Gabi2439g00002 181 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 12 58 IPR006456 -
Gabi2439g00002 181 FunFam Zinc-finger homeodomain protein 2 93 168 - -
Gabi2439g00002 181 NCBIfam homeobox domain, ZF-HD class 106 164 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2439g00002 Gabi-Chr2439 13868 14413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2439g00002 12 163 ZF-HD Transcription Factor Family AT1G14440 44.086 8.98e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi2439g00002 ZF-HD_dimer 2.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2439g00002 - - qsu:112019750 235.728