Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2435g00012 ATGGCTCTTCTTCTAGACAATTGTGAAGGCATTTTGCTCTCTCTAGACTCTCACAAATCAGTGCCGGCACCCTTCCTTACAAAGACATACCAACTCGTAGACGATCCCAGCACCGATCACATAGTCTCTTGGGGCGAAGACGACACCACCTTTGTCGTTTGGCGTCCTCCCGAGTTCGCTAGGGATCTTCTCCCAAACTATTTCAAACACAACAACTTCTCAAGCTTCGTTCGCCAGCTCAACACTTATGGTTTCAGAAAGATTGTGCCTGATAGATGGGAGTTTGCGAATGAATTCTTCAAGAAAGGAGAGAAACACTTGCTGTGTGAGATCCATAGAAGAAAGACTTGTCAGCCTCAGCATGTAACAATGAATCATCACCATTCATCTCCACTGGGACTCAACGTTCCTACTTTCTTTCCTTTCCACAACAGAGTTAGCATCTCTCCTCCTAATGACTCTGACGAGTTAACCAATTGGTGTGACTCGCCGCCAAGAGGAGGAGGAGGAGGAGGCACTTCAGCCATGATCGGAAGCAACTACAACACCGTCACTGCACTCTCTGAGGACAATGAAAGACTAAGACGAAGCAACAACATGCTCATGTCTGAGCTCGCACACATGAAGAAGCTTTATAACGATATAATCTACTTCGTTCAGAACCATGTTAAGCCTGTGGCTCCAAGCAATAGTTACCCTTCTTTTCTTCTCTGCAATAATAATACACCACAAGCCTCCGCTTCCTCTCCTTGTAATGTTTCAACGGTGCAAAGGCCAATGAACCAGCTTTTGGGGTATTATTCGAATAACCCTAAGCAAGCTCATGCTATGAACTCTCCCACTAACACTTCAAGAAGCTCCATAACATTTGTTGAACAACCTAGCAGTAACAGCTGCAAGACTAAGCTTTTTGGGGTATCTCTTCAATCCAAGAAAAGGGTGCACCCTGAGTATGGATCTAATCTCATGAATTCTGAAACGAACAAGGCTCGTTTGGTGTTGGAAAAGGATGACTTAGGCTTGAATCTCATGCCTCCTTCAACTTGTTAG 1050 0.4486 MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTCQPQHVTMNHHHSSPLGLNVPTFFPFHNRVSISPPNDSDELTNWCDSPPRGGGGGGTSAMIGSNYNTVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYPSFLLCNNNTPQASASSPCNVSTVQRPMNQLLGYYSNNPKQAHAMNSPTNTSRSSITFVEQPSSNSCKTKLFGVSLQSKKRVHPEYGSNLMNSETNKARLVLEKDDLGLNLMPPSTC 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2435g00012 349 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2435g00012 349 Coils Coil 184 204 - -
Gabi2435g00012 349 Gene3D - 17 116 IPR036388 -
Gabi2435g00012 349 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2435g00012 349 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2435g00012 349 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2435g00012 349 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 286 IPR027725 -
Gabi2435g00012 349 FunFam Heat stress transcription factor B-4 17 115 - -
Gabi2435g00012 349 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2435g00012 349 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Gabi2435g00012 349 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2435g00012 Gabi-Chr2435 310024 311209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2435g00012 1 348 HSF AT1G46264 56.915 2.88e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi2435g00012 HSF_DNA-bind 2.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2435g00012 K09419 - gmx:100781389 572.392