Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2435g00009 ATGGCTCACATGCACCAAACACAACCATATTTAGTGAGAGGCTTGCCACCGGAATCTGAAGAGTTCTCTACCTTGTTCAACCAACTCTTTAACAACTCTTCACCAATAGGGATGAACCCGAACATATCCGGGTCGGACTACACCTCACCCCACCCGGTTGCTTCATCTCCCTCAAGTTCCCATTTCTCTGATCCCTATGCTAATGCTTACATCCCTGACCCTGATCCCAACACCTCCTTCAAACAACACAACATCAAAGAGACTCATCCCTCTGATTTCACTTTCTCCGTTGAGAAGAATGGTGAGGCATCAGAGTTGCCATCAAAGCGTGTCCCACCATCACGTACTTCCTCAAAGAGAAGCAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAATTGAAAGCCTTGCAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTGGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTTCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTACCAGGGGGACTGCGACCTATGATATTGCCTCAGACTGGGTTCAATCTTGATGAGGGTAATGGATTTCAGAATTCCACCAGTGCAATTGCCTCATCTGCAAATGATGAAAGCTTAATGCGGTCAGCTTTTAGTTTTCCAAAGCAATGCAGCATCTCACATCAGTCTGTTGTCTTACCCTCAGTGACAAATGTAGTTACTTCGGATACCTCATCCCGTTTTCAACCCTCAATTAAGGATGCACTCTGCGGAAGCATGCCACAACTGTTTTTGGATACAACAGAGATTGGAAAAACCCCTTCTCCAGATGTGTCTTAA 888 0.4381 MAHMHQTQPYLVRGLPPESEEFSTLFNQLFNNSSPIGMNPNISGSDYTSPHPVASSPSSSHFSDPYANAYIPDPDPNTSFKQHNIKETHPSDFTFSVEKNGEASELPSKRVPPSRTSSKRSRAAEFHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGGLRPMILPQTGFNLDEGNGFQNSTSAIASSANDESLMRSAFSFPKQCSISHQSVVLPSVTNVVTSDTSSRFQPSIKDALCGSMPQLFLDTTEIGKTPSPDVS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2435g00009 295 SMART finulus 128 177 IPR011598 GO:0046983
Gabi2435g00009 295 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 17 269 IPR031066 -
Gabi2435g00009 295 MobiDBLite consensus disorder prediction 120 134 - -
Gabi2435g00009 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
Gabi2435g00009 295 Gene3D - 117 181 IPR036638 GO:0046983
Gabi2435g00009 295 FunFam Basic helix-loop-helix transcription factor 117 180 - -
Gabi2435g00009 295 Pfam Helix-loop-helix DNA-binding domain 126 172 IPR011598 GO:0046983
Gabi2435g00009 295 CDD bHLH_AtPIF_like 122 184 IPR047265 -
Gabi2435g00009 295 MobiDBLite consensus disorder prediction 37 134 - -
Gabi2435g00009 295 MobiDBLite consensus disorder prediction 37 65 - -
Gabi2435g00009 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 182 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2435g00009 Gabi-Chr2435 272745 274979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2435g00009 122 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 64.348 1.27e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2435g00009 HLH 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2435g00009 - - gmx:100785332 365.925