LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2435g00008	ATGCAAGGGCAGAGAGGTACAATTGGTTCCTTGCCTGAAACCTTCGAATTTGATTGTGGATCTACATCAAGTAATACTACCGTTGATCAGCATATTTTCTGGAATAATATGCGGAATCCTGCAGAAAATCAAGTATCTGAATATATACTTTCCCCCGGTGATATAAACCCATCTTACGTGAATTCTATAAACCATGAGTGGCAGAACTTGACTGGATGGAGCTTAGGTGAGCCAAGTTCCGTTAACGCACAGAATGAAGTTAACAACAATGAACAGAAAACAGAGCTAGGATTATCATCCTCAATAAGTACTGGTGCTATAGCTGGTCCAAGACTAGAAGAAAGGCGCAATGAACCAACCAATACCTTTTCACTGGACAACGTCAATACAAGTCCTATTTATATGTGCAGTTCCAATTCTCATTTGGTGGCACAGAATCTCAACTTAAATGCAGGTTTAGCAGATAGTGGCAGTAATAATACTCATAATGTTGAACATCCTAACTTGCACAAGTCAATTGGACCTGTAAATGAGCATATTCCACCTACTATTGGTTCTGGTCCATTTCTTTTTCCTTCTGGGAGTAATGGCTTTTTTGTTGAGGATACTGATGGTAGGGCGGGTTGTTCTCTAGACGCACGCCGTTTATCTTGTAAAAGAAAGGCTGTTGAACGAAATGTTGGACAATCTTCAGACGGCGCAAGTTCTAGTTACAGTCAGCGTACAGATGGTAGTGCTTGGAACAGTCTTCCAACTCAGGATTATGCAGGAAACAGTTTTAACAGATCTGCCTCAGCAGAACAGTTAAATGCAAGACTTGGCCTGAGTATGGGGGATGGAACCTCCGAAACCATTCCTGACTCAAATGTTACAGGAAGCTCAGAAAATTTCCAGAGAAATTTTCGTTTGAGGGTAAATCCTTCAAGCCAACAAATTCCAATTCCTCCCACTGCGCACTCAAGCGGGAGTATGATTAGGAATTCTGGTGTTTCTTCATCCTCTCCAATATTGCAAAGGACTCATCTTGTTGATAATTCTTTGGACTTGAGGTCAGCACCGCCATTAGATGCTATGATTTCTCAAAGTCAGCCCCTTCTAATTCATGTTCCTGCTTTATCAAGGAATATGCAATCATTCAGGTGGAGTGGTGGTTCTAGCTCAACAAACAACCATTCATCGAACTCAGTTATATGTGCAAATAGTAATAATCTACCACATGAGGAAGCAAGCTCAAGAATTATGCCTAGAAACATTTTAGAACACCCAGTGTTTGTACCGGCAACCAATTTAAGAAATTTGGCTCGAAATCCAACAACTAGAGCTTTTAGTAGTGCTAATTTAAGTATTCCAGGAAATGTTGCTTCTTCATCGCGGAATGGGTCAAATTCAGCTATTAATCCATCATCTGCCTCTACGTGGGCTCCTCCTCCTAATCCTCAGCAGTATCCACGCAGGTTATCTGAATTTGTTCGTCGTTCCTTGTTTTCTCCTGGTTCTGAAGCTGGTGGAGGTCCAAGCAATAATTATTCATCCTTGCGTGGTCCTTCTACTTCATCTGAATTAAGGGGACTGTCATCTGGGGTACACCCAGGACCATCTTCTTGGATGGAGAGGCAAGGTGATAGTGAATTTGGAATTCCCTATTCATTACGATCTTTGGCTGCTGCTGGTGAAGGAAGTAGTGGTAGACTTGTATCTGAGCTCCGCAATGTGTTGGGCCTCATGCGTAGGGGTGGGAACCTGCGATTTGAGGATGTTATGATCCTTGAACAATCAGTGTTCTCTGGAATTGCTGATATTCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTATTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCATATTGAAACTTTTGAAACAGAAGAAGTATTCAGTTGAAACAGGATCTCAGCTTGAGGCAGAACCCTGCTGTGTTTGTCAGGAGGAATATAACGTCGGAGATGATATTGGATCGCTGGATTGTGGGCATGATTACCATACCGAATGTATTATACAATGGCTAATGCATAAGAATCTGTGTCCCGTTTGTAAGACAACGGGCTTGGCAACATGA	2124	0.4214	MQGQRGTIGSLPETFEFDCGSTSSNTTVDQHIFWNNMRNPAENQVSEYILSPGDINPSYVNSINHEWQNLTGWSLGEPSSVNAQNEVNNNEQKTELGLSSSISTGAIAGPRLEERRNEPTNTFSLDNVNTSPIYMCSSNSHLVAQNLNLNAGLADSGSNNTHNVEHPNLHKSIGPVNEHIPPTIGSGPFLFPSGSNGFFVEDTDGRAGCSLDARRLSCKRKAVERNVGQSSDGASSSYSQRTDGSAWNSLPTQDYAGNSFNRSASAEQLNARLGLSMGDGTSETIPDSNVTGSSENFQRNFRLRVNPSSQQIPIPPTAHSSGSMIRNSGVSSSSPILQRTHLVDNSLDLRSAPPLDAMISQSQPLLIHVPALSRNMQSFRWSGGSSSTNNHSSNSVICANSNNLPHEEASSRIMPRNILEHPVFVPATNLRNLARNPTTRAFSSANLSIPGNVASSSRNGSNSAINPSSASTWAPPPNPQQYPRRLSEFVRRSLFSPGSEAGGGPSNNYSSLRGPSTSSELRGLSSGVHPGPSSWMERQGDSEFGIPYSLRSLAAAGEGSSGRLVSELRNVLGLMRRGGNLRFEDVMILEQSVFSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKQKKYSVETGSQLEAEPCCVCQEEYNVGDDIGSLDCGHDYHTECIIQWLMHKNLCPVCKTTGLAT	707

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2435g00008	707	FunFam	E3 ubiquitin-protein ligase MBR2	628	705	-	-
	Gabi2435g00008	707	MobiDBLite	consensus disorder prediction	495	540	-	-
	Gabi2435g00008	707	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	214	705	IPR045191	GO:0061630
	Gabi2435g00008	707	MobiDBLite	consensus disorder prediction	443	483	-	-
	Gabi2435g00008	707	MobiDBLite	consensus disorder prediction	443	471	-	-
	Gabi2435g00008	707	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	623	704	IPR013083	-
	Gabi2435g00008	707	MobiDBLite	consensus disorder prediction	500	524	-	-
	Gabi2435g00008	707	Pfam	Ring finger domain	660	701	IPR001841	-
	Gabi2435g00008	707	ProSiteProfiles	Zinc finger RING-type profile.	660	701	IPR001841	-
	Gabi2435g00008	707	MobiDBLite	consensus disorder prediction	221	250	-	-
	Gabi2435g00008	707	SMART	ring_2	660	700	IPR001841	-
	Gabi2435g00008	707	MobiDBLite	consensus disorder prediction	308	333	-	-
	Gabi2435g00008	707	SUPERFAMILY	RING/U-box	649	703	-	-
	Gabi2435g00008	707	MobiDBLite	consensus disorder prediction	228	250	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2435g00008	Gabi-Chr2435	255584	261680	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2435g00008	1	707	C3H Transcription Factor Family	AT2G15530	33.202	1.88e-78	263