Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2435g00007 ATGGAAGACGAAGAACCTCACTCTCACTCTCACTCTCAGTCTCAGTCTCAGCGTGCTTCGCTCCCACCCGGTTGCCGGTTCTACCCTTCGGAAGAGCTTCTCCTCCGCTACTATCTAACCAACAAGAACGCGAACCGTGATGGGGATTTCTACGGTTCTGATTTGATCACTGAACTGGACCTATACAATCACGACCCCTTCGAATTGCCCGACGCTTCCTGCTTTTCGTACGGTTATCGAGGGAGTAAGAGGCATTGGTACTGTTATACGGTTAGGGTTGTGAAGGACGCGAGGCGCGTGAGAATGAAAGTGAAGACCGGGTTCTGGCTCAGAAAAGGAAGGGTTAGGGATGTTTTCGGAAACGGTGGAAACGTTCTCTTAGGCACCAGAACCCGCTTCGTTTTCTACGTTGGCAATTCTCCAAAGAACGCTACCAGAACGGATCGAATATTGTACGAGTACGCCTTGGTTGACCATCTTCTGGGTTCTTTTGTCCTTTGCCGTGTATTTGTTAAGGAGGCTCATCATAATAAGAATAGTCCATCAGAGATTGGTCTGAGTTGTTGTGCAGAAGAAAGTGTCTCAGCGGTGCGTCATGTTGGTGTTCAGTATGATGGATATGCCAGAGCTGATGTTGTTGAAGGTAGAGTTTGTGATGATAGCTCCGTTGACAGAAAGAATGGATGTGCTAGTGAACAAGATGATCGTCAAGTTTTGACCGAACCTGTTTCGGTTGCTCCTTTCCAATGTTCTGCAGCAGGTCCTCAGGGCTGTCAGCAGGAAAGGCTTTCTGGACTTCCTGGCGGTAGTGCATTGTTCATTGAAGCTGTAACATCTCGGCAACTTTTACTTTCCATTCTAGAGGAGGATTTCATAGAATTGAATGATCTTGCATGA 897 0.4749 MEDEEPHSHSHSQSQSQRASLPPGCRFYPSEELLLRYYLTNKNANRDGDFYGSDLITELDLYNHDPFELPDASCFSYGYRGSKRHWYCYTVRVVKDARRVRMKVKTGFWLRKGRVRDVFGNGGNVLLGTRTRFVFYVGNSPKNATRTDRILYEYALVDHLLGSFVLCRVFVKEAHHNKNSPSEIGLSCCAEESVSAVRHVGVQYDGYARADVVEGRVCDDSSVDRKNGCASEQDDRQVLTEPVSVAPFQCSAAGPQGCQQERLSGLPGGSALFIEAVTSRQLLLSILEEDFIELNDLA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2435g00007 298 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
Gabi2435g00007 298 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 209 - -
Gabi2435g00007 298 Pfam No apical meristem (NAM) protein 22 156 IPR003441 GO:0003677|GO:0006355
Gabi2435g00007 298 ProSiteProfiles NAC domain profile. 21 172 IPR003441 GO:0003677|GO:0006355
Gabi2435g00007 298 Gene3D NAC domain 30 177 IPR036093 GO:0003677|GO:0006355
Gabi2435g00007 298 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2435g00007 Gabi-Chr2435 232246 234943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2435g00007 11 172 NAC Transcription Factor Family AT2G24430 33.140 2.93e-22 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi2435g00007 NAM 3.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2435g00007 - - gmx:100785871 350.903