Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2435g00005 ATGGGAAGCATGAAGGTGCATCAATTCACACGTGGATTCTGGGAGCACGAACCCTCCCTCACACTTGGGTGCAAGCGCTTACGCCCTCTTGCGCCCAAGCTTTCTAACACCGACACCACTAGTTTTGATCTCAAGAGCTTCATCAGACCTGAAAGTGGCTCCAGAAAACTTGGATCCTCTGAAGATAATAAGAAGGATCCACCTTCACCACAAAGCCAGGTGGAAACGCATATTGCTGGAGGGACACGGTGGAATCCGACGCAAGAACAGATAGGTATATTGGAGATGCTGTATAAAGGTGGGATGCGAACTCCAAATGCTCAACAAATAGAGCAGATCACGGTCCAACTTGGAAAGTACGGCAAGATCGAAGGGAAGAATGTGTTCTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAGCGCAACAGTCTTGGCCTTGTTCATAGTCCTCGAACTCCCACTACAGTATCATCCAACTTTTCTAGTGTAACTTTCGAGACAACGACGAGGGGGGAAGTAGCAGAAAGAGATCAGGAAGATAGCCCATTCAAGAAGTGTAGGAGGAGTTGGGGATTTGAGTACATGGAAGACCAAAGTTGGTCATCTTGCAAAGAGGAGGAACATAAAACTCTTGAGCTTTTCCCATTGCACCCGGAAGGCAGATGA 678 0.4749 MGSMKVHQFTRGFWEHEPSLTLGCKRLRPLAPKLSNTDTTSFDLKSFIRPESGSRKLGSSEDNKKDPPSPQSQVETHIAGGTRWNPTQEQIGILEMLYKGGMRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLVHSPRTPTTVSSNFSSVTFETTTRGEVAERDQEDSPFKKCRRSWGFEYMEDQSWSSCKEEEHKTLELFPLHPEGR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2435g00005 225 SMART HOX_1 79 146 IPR001356 GO:0003677
Gabi2435g00005 225 SUPERFAMILY Homeodomain-like 81 148 IPR009057 -
Gabi2435g00005 225 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
Gabi2435g00005 225 FunFam WUSCHEL-related homeobox 4 81 148 - -
Gabi2435g00005 225 MobiDBLite consensus disorder prediction 64 86 - -
Gabi2435g00005 225 Gene3D - 82 147 - -
Gabi2435g00005 225 MobiDBLite consensus disorder prediction 42 86 - -
Gabi2435g00005 225 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 225 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Gabi2435g00005 225 CDD homeodomain 82 143 IPR001356 GO:0003677
Gabi2435g00005 225 MobiDBLite consensus disorder prediction 147 162 - -
Gabi2435g00005 225 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Gabi2435g00005 225 MobiDBLite consensus disorder prediction 141 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2435g00005 Gabi-Chr2435 198328 200043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2435g00005 4 173 Wox Gene Family AT1G46480 60.638 3.12e-65 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi2435g00005 Homeodomain 1.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2435g00005 - - aprc:113848075 356.295