Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2435g00004 ATGGAAGACAGGGATTGTTGTTGTTCCACCAATTCAAACATCACACGAAGCAAAAGAAGTAGCAGTCACACGGAGAAAGCGAAGAAACAACAACAAGAGAAACCAATCAAACCATACAGAGGGATAAGGATGAGGAAGTGGGGTAAGTGGGTGGCTGAGATTAGAGAACCAAACAAGAGATCCAGGATTTGGTTGGGTTCTTACACCACCCCTGTCGCCGCCGCACGAGCCTACGACACCGCCGTGTTCTACCTGAGGGGCCCATCAGCTCGCCTCAACTTCCCCGAATTGTTGTTCCAAGACCAAGAAGATTCCATCCATCAATTACAGAACATGTCCGCAGATTCCATACGCCAAAAAGCCACCCAAGTTGGTGCCAGAGTGGACGCTCTCCAAACAGCTCTTCATGCTTCTTCCACTTCCACCTCCCAGAAACCTGACTTGAATGAGTTTCCAAAACCTGAAGATTCCCTTGACCTTCAGGATTGA 489 0.4867 MEDRDCCCSTNSNITRSKRSSSHTEKAKKQQQEKPIKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDQEDSIHQLQNMSADSIRQKATQVGARVDALQTALHASSTSTSQKPDLNEFPKPEDSLDLQD 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2435g00004 162 MobiDBLite consensus disorder prediction 135 162 - -
Gabi2435g00004 162 Pfam AP2 domain 39 87 IPR001471 GO:0003700|GO:0006355
Gabi2435g00004 162 MobiDBLite consensus disorder prediction 1 36 - -
Gabi2435g00004 162 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Gabi2435g00004 162 PRINTS Ethylene responsive element binding protein signature 77 97 IPR001471 GO:0003700|GO:0006355
Gabi2435g00004 162 FunFam Ethylene-responsive transcription factor 2 37 96 - -
Gabi2435g00004 162 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Gabi2435g00004 162 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 17 157 - -
Gabi2435g00004 162 CDD AP2 39 97 IPR001471 GO:0003700|GO:0006355
Gabi2435g00004 162 MobiDBLite consensus disorder prediction 19 36 - -
Gabi2435g00004 162 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Gabi2435g00004 162 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Gabi2435g00004 162 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2435g00004 Gabi-Chr2435 99379 104141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2435g00004 32 157 AP2-EREBP Transcription Factor Family AT2G23340 55.172 6.25e-50 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2435g00004 AP2 2.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2435g00004 K09286 - gmx:547642 223.402