Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2435g00003 ATGAATTCCCTGTGGCTCCACAATGCAAATCCAACAATACACACACTCCACTTTCACTCTCACACCAGAACCACCACCACCACCACCACCCGTTATTCCCTTTCATCAAAGAAACCCCTTCTCCTCCATCAACGATTCCGATGTTCCATCGAGATCGACATGGTCAAGAACAACCAAGGCATCTACGCTCCCAAACACGACAAAGTGGTAGTTCTCTGGGACCTCGACAACAAACCCCCGCGGGGCCCACCCTACAACGCCGCCGTTGCCCTCAAACAAGTAGCGGAGCGGTTCGGCGATGTGGTCGAAATCTCAGCCTACGCGAACCGCCACGCGTTCATCCACCTCCCGCAGTGGGTGGTGGAGGAACGCCGCGAACGGAAGCAGCTCGACATCATGGAACGCAAGCGCGTGGTGACACCTTCGGAGCCTTACACGTGCGGCGTGTGCGGGCGCAAATGCAAGACGAACATGGACCTGAAGAAGCACTTCAAGCAACTCCACCAGCGCGAGCGCCAGAAGAAGCTGAACCGGGCTCGTTCCCTCAAGGGGAAAGCCAAACAGCGGTTCATGGAACGGTTCATTCGCGGGAACCACAAGTACAACGAAGCTGCGAGGTCTCTCGTTACGCCTAAGGTTGGTTATGGGCTTGCTTCGGAGTTGCGTCGCGCTGGTGTGTTCGTTAAAACGGTTGAGGATAAGCCTCAGGCTGCGGATTGGGCACTTAAGAGGCAAATGCAACACTCTATGAGTAGAGGGATTGATTGGTTGTTTTTGGTTTCCGATGATTCGGATTTTTCGGATATGTTAAGGAGGGCCAGGGAGGCGAATTTGGGGACCGTTGTTGTTGGGGATTGGGACAGGGCGTTGAGGCGGCATTGTGATTTGTGGGTTCCTTGGATTGGGGTTGAGAATGGTGAGATTTCGGAGACGGATTTGATTCCCAAAATTAGGGGAAGAGAAGAGGGTTTTGTGAAAGATGGATTGGAACAAGATTATGATTATATGTTGGTCAATAGTGAGGATGAAGAGGACACTGAAGAAGGAGAAGATGTGTTTTATATTAATAGTGAGGATGAGGAGGACACAGAACAAGAAGAAGAAGAAGAAGATGGGTTTTATATTTATTGA 1131 0.5111 MNSLWLHNANPTIHTLHFHSHTRTTTTTTTRYSLSSKKPLLLHQRFRCSIEIDMVKNNQGIYAPKHDKVVVLWDLDNKPPRGPPYNAAVALKQVAERFGDVVEISAYANRHAFIHLPQWVVEERRERKQLDIMERKRVVTPSEPYTCGVCGRKCKTNMDLKKHFKQLHQRERQKKLNRARSLKGKAKQRFMERFIRGNHKYNEAARSLVTPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWLFLVSDDSDFSDMLRRAREANLGTVVVGDWDRALRRHCDLWVPWIGVENGEISETDLIPKIRGREEGFVKDGLEQDYDYMLVNSEDEEDTEEGEDVFYINSEDEEDTEQEEEEEDGFYIY 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2435g00003 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 173 IPR013087 -
Gabi2435g00003 376 CDD PIN_LabA-like 155 285 - -
Gabi2435g00003 376 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 48 369 - -
Gabi2435g00003 376 SUPERFAMILY beta-beta-alpha zinc fingers 134 173 IPR036236 -
Gabi2435g00003 376 Gene3D - 62 301 - -
Gabi2435g00003 376 ProSitePatterns Zinc finger C2H2 type domain signature. 147 168 IPR013087 -
Gabi2435g00003 376 MobiDBLite consensus disorder prediction 340 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2435g00003 Gabi-Chr2435 74330 75999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2435g00003 14 373 C2H2 Transcription Factor Family AT5G52010 63.812 5.00e-162 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2435g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2435g00003 - - qsa:O6P43_016041 478.404