LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2434g00031	ATGGGTTCCAGCGAGTTGGGTTGCACCTACGCCACTTTGATTCTCCACGATGATGGAATCCCAATCACCGCGGAAAAGATTAGCGCTTTGTTGAAAGCGGCTAACGTCACCGTTGAATCCTACTGGCCCAGCCTATTCGCTAAGCTTGCTCAGAAGAGGAACGTCGAGGACCTTGTTTTGAATGCTGGTTCGGGTGGTGGTGCAGCCGTTGCTGTTGCTGCTCCTTCTGCCGCCGGTGGCGGCGGTGGTGGTGCCGCCGCCGCTGCAGCACCTGCCGCTGAGGAAAAGAAGGAAGAGCCTAAGGAAGAAAGTGACGATGACATGGGTTTCAGCTTATTTGATTAG	345	0.5478	MGSSELGCTYATLILHDDGIPITAEKISALLKAANVTVESYWPSLFAKLAQKRNVEDLVLNAGSGGGAAVAVAAPSAAGGGGGGAAAAAAPAAEEKKEEPKEESDDDMGFSLFD	114

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2434g00031	114	MobiDBLite	consensus disorder prediction	77	114	-	-
	Gabi2434g00031	114	PANTHER	60S ACIDIC RIBOSOMAL PROTEIN P1	1	114	-	-
	Gabi2434g00031	114	FunFam	60S acidic ribosomal protein P1	1	63	-	-
	Gabi2434g00031	114	Hamap	50S ribosomal protein L12 [rpl12].	6	114	IPR027534	GO:0003735\|GO:0005840\|GO:0006414
	Gabi2434g00031	114	Gene3D	-	2	63	IPR038716	-
	Gabi2434g00031	114	PRINTS	Ribosomal protein P2 signature	101	112	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Gabi2434g00031	114	PRINTS	Ribosomal protein P2 signature	25	36	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Gabi2434g00031	114	PRINTS	Ribosomal protein P2 signature	86	100	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Gabi2434g00031	114	MobiDBLite	consensus disorder prediction	92	108	-	-
	Gabi2434g00031	114	CDD	Ribosomal_P1	5	61	-	-
	Gabi2434g00031	114	Pfam	60s Acidic ribosomal protein	22	113	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2434g00031	Gabi-Chr2434	308137	309661	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2434g00031	1	114	Cytoplasmic Ribosomal Protein Gene Family	AT5G24510	58.333	7.86e-40	127

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2434g00031	K02942		-	thj:104798987	126.716