Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2434g00023 ATGGGGGAAGAGATGTTGTGTGGTGAGAAGCTAGTGATGGAAAGGCAGAGGGAGGAGGAGGAAGAGGAAGAGAGTGGAACAGGTAGCAGAGATGAATTGAGAGGGTTGATGAGGTGGGAGAAGTTCTTGCCGAAGATGGTTTTGAGAGTGCTCTTAGTTGAAGCAGATGACTCCACCAGACAGATTATAGCGGCGCTTCTTAGGAAATGCAACTACAAAGTGGCTTCTGTTCCTGATGGCTTGAAGGCATGGGAAATACTCAAGGGAAGACCTGGTGATATAGATCTGATACTGACAGAAGTGGATTTGCCATCCATATCTGGCTATGCACTTCTCACACTAATTATGGAGCATGAGATTTGCAAAAATATCCCTGTCATAATGATGTCCTCACAAGATTCGGTTAGCACGGTATACAAATGCATGTTGAGAGGTGCTGCTGACTATCTTGTTAAGCCCCTTAGAAAAAATGAACTGAGGAATTTGTGGCAGCATGTTTGGAGGAGACAATCATCTAATACTGGCATAAATGGCCCACCTGATGAGAGTTTTGCACAGCACAAGATTGAAGCCACTGCTGAAAACAATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTTGCATTCAGAGGAATAAGGAATTGATCGAGAAAGGAAGTGATGCGCAGAGCTCTTGTACAAAACCTGACTTGGAAGATGAGAGTGGCCATGTCGATAAGGTTCATGAATTTTCTCCGTTGAAATGTAGTGAAGCATTTCCAAGTGGAGCAAAGGCACAAGAGGTTGAAACATGCATTCGTTTAGGACAGACATTAATCATGCATGACAGTCATGCTGGAGGATTAAATGTGGGTATCTGCAAAAATGGTGAGACAAGCACAACTAATGGCAAGGACGCTGATCCTGAGCATTTTCGGAGTGCTAGCATCAGCAGCATGTTTGACTTTTCTCCACAATTGGATCTTTCCCTCAGAGGATCTCATCCCAGCAACTTTGAGAATGAACTCACTGAAGAAAGGCACACCCTCATGCATTCGAATGCTTCAGCTTTCAAGCGGTATACTAACAGGAAATTGCAAGCCTCACCTGCAGTGCTAGTTGACTTCTCCAATCAACAAAGAGAACAGAGAACAAATGGAGAGAAAAGTATCTCCTATATTGCTACTGGCTGCAACTCAGACAATTCCACACCTAGTATGCAAAGATGTATTATGTCTCCAGCTACAGCCCAATCAAAAGAATCTGAATTCGCAACCTCACACTCACAGCAAGGGCATTCTCTCCCAATTCCAGTAAAAGGTGTAAGGTTCAATGATCTATGCACACCCTATGGTTCTGTACTTCCTCCAATGTTCCAAACACAGTCTGGTCCCCCATCAATGCCAAGTCCAAGTTCAGTTGTGCTCCTTCAACCAACCTTTCAAGTAAATGCATTTTATCAGTCAAATACTAAAGAAAACGGTTCAGAGCAGCTTTATGAACCTCGTGGTCAAAATGGAAACAGCGCCCCAAACCACATTGTGTACACCCAGGAACTCAGACAAGAACATGCAGAGGATCGTGGACATATCTCACCTGCAACTGATCAAAGTGTATCCAGTAGTTTCTGTAATGGAAATGCAAGCCAACTTAACAGCATAGGTTATGGAAGCAATTGTGGAAGTAGCAGCAATGTTGATCAAGTTGCAATTGTGAGGGCAGCTTCAGAGGGTAAGAATGAAGACCTCACAACCAATGGAAATTCTCATAGATCAATCCAAAGGGAAGCAGCTCTAAACAAGTTCCGCTTGAAACGCAAAGAAAGATGTTATGAGAAAAAGGTTCGATACGAGAGCAGAAAGAAACTAGCTGAGCAGCGTCCAAGGATAAAAGGACAATTTGTGCGTCAAGTGCCATCTTAA 1929 0.436 MGEEMLCGEKLVMERQREEEEEEESGTGSRDELRGLMRWEKFLPKMVLRVLLVEADDSTRQIIAALLRKCNYKVASVPDGLKAWEILKGRPGDIDLILTEVDLPSISGYALLTLIMEHEICKNIPVIMMSSQDSVSTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSSNTGINGPPDESFAQHKIEATAENNAASNRSSGDAASNRSSGDAACIQRNKELIEKGSDAQSSCTKPDLEDESGHVDKVHEFSPLKCSEAFPSGAKAQEVETCIRLGQTLIMHDSHAGGLNVGICKNGETSTTNGKDADPEHFRSASISSMFDFSPQLDLSLRGSHPSNFENELTEERHTLMHSNASAFKRYTNRKLQASPAVLVDFSNQQREQRTNGEKSISYIATGCNSDNSTPSMQRCIMSPATAQSKESEFATSHSQQGHSLPIPVKGVRFNDLCTPYGSVLPPMFQTQSGPPSMPSPSSVVLLQPTFQVNAFYQSNTKENGSEQLYEPRGQNGNSAPNHIVYTQELRQEHAEDRGHISPATDQSVSSSFCNGNASQLNSIGYGSNCGSSSNVDQVAIVRAASEGKNEDLTTNGNSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRIKGQFVRQVPS 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2434g00023 642 Pfam CCT motif 597 639 IPR010402 GO:0005515
Gabi2434g00023 642 MobiDBLite consensus disorder prediction 194 213 - -
Gabi2434g00023 642 CDD psREC_PRR 50 153 - -
Gabi2434g00023 642 ProSiteProfiles CCT domain profile. 597 639 IPR010402 GO:0005515
Gabi2434g00023 642 SUPERFAMILY CheY-like 48 171 IPR011006 -
Gabi2434g00023 642 Gene3D - 46 245 - -
Gabi2434g00023 642 SMART REC_2 48 163 IPR001789 GO:0000160
Gabi2434g00023 642 Pfam Response regulator receiver domain 50 161 IPR001789 GO:0000160
Gabi2434g00023 642 MobiDBLite consensus disorder prediction 228 247 - -
Gabi2434g00023 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 48 234 IPR045279 GO:0009736
Gabi2434g00023 642 MobiDBLite consensus disorder prediction 10 30 - -
Gabi2434g00023 642 ProSiteProfiles Response regulatory domain profile. 49 167 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2434g00023 Gabi-Chr2434 220796 225475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2434g00023 24 457 Response Regulator Gene Family AT5G24470 44.371 3.35e-102 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gabi2434g00023 Response_reg 7.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2434g00023 K12130 - gmx:100784383 964.526