Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2434g00022 ATGGGGGAAGAGATGTTGTGTGGTGAGAAGCTAGTGATGGAAAGGCAGAGGGAGGAGGAGGAAGAGGAAGAGAGTGGAACAGGTAGCAGAGATGAATTGAGAGGGTTGATGAGGTGGGAGAAGTTCTTGCCGAAGATGGTTTTGAGAGTGCTCTTAGTTGAAGCAGATGACTCCACCAGACAGATTATAGCGGCGCTTCTTAGGAAATGCAACTACAAAGTGGCTTCTGTTCCTGATGGCTTGAAGGCATGGGAAATACTCAAGGGAAGACCTGGTGATATAGATCTGATACTGACAGAAGTGGATTTGCCATCCATATCTGGCTATGCACTTCTCACACTAATTATGGAGCATGAGATTTGCAAAAATATCCCTGTCATAATGATGTCCTCACAAGATTCGGTTAGCACGGTATACAAATGCATGTTGAGAGGTGCTGCTGACTATCTTGTTAAGCCCCTTAGAAAAAATGAACTGAGGAATTTGTGGCAGCATGTTTGGAGGAGACAATCACACAAGATTGAAGCCACTGCTGAAAACAATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTTGCATTCAGAGGAATAAGGAATTGATCGAGAAAGGAAGTGATGCGCAGAGCTCTTGTACAAAACCTGACTTGGAAGATGAGAGTGGCCATGTCGATAAGGTTCATGAATTTTCTCCGTTGAAATGTAGTGAAGCATTTCCAAGTGGAGCAAAGGCACAAGAGGTTGAAACATGCATTCGTTTAGGACAGACATTAATCATGCATGACAGTCATGCTGGAGGATTAAATGTGGGTATCTGCAAAAATGGTGAGACAAGCACAACTAATGGCAAGGACGCTGATCCTGAGCATTTTCGGAGTGCTAGCATCAGCAGTGAGGCTCATGACAATCACTGTGTTCAAATTAAGTCTTCTAAGGAAGCTATTGACTTGATTGGAGCATTTCATACTCGTGCAAACTGCAGTCTGAGAAATTCCTCAGTTGATTGCACAGGCATGTTTGACTTTTCTCCACAATTGGATCTTTCCCTCAGAGGATCTCATCCCAGCAACTTTGAGAATGAACTCACTGAAGAAAGGCACACCCTCATGCATTCGAATGCTTCAGCTTTCAAGCGGTATACTAACAGGAAATTGCAAGCCTCACCTGCAGTGCTAGTTGACTTCTCCAATCAACAAAGAGAACAGAGAACAAATGGAGAGAAAAGTATCTCCTATATTGCTACTGGCTGCAACTCAGACAATTCCACACCTAGTATGCAAAGATGTATTATGTCTCCAGCTACAGCCCAATCAAAAGAATCTGAATTCGCAACCTCACACTCACAGCAAGGGCATTCTCTCCCAATTCCAGTAAAAGGTGTAAGGTTCAATGATCTATGCACACCCTATGGTTCTGTACTTCCTCCAATGTTCCAAACACAGTCTGGTCCCCCATCAATGCCAAGTCCAAGTTCAGTTGTGCTCCTTCAACCAACCTTTCAAGTAAATGCATTTTATCAGTCAAATACTAAAGAAAACGGTTCAGAGCAGCTTTATGAACCTCGTGGTCAAAATGGAAACAGCGCCCCAAACCACATTGTGTACACCCAGGAACTCAGACAAGAACATGCAGAGGATCGTGGACATATCTCACCTGCAACTGATCAAAGTGTATCCAGTAGTTTCTGTAATGGAAATGCAAGCCAACTTAACAGCATAGGTTATGGAAGCAATTGTGGAAGTAGCAGCAATGTTGATCAAGTTGCAATTGTGAGGGCAGCTTCAGAGGGTAAGAATGAAGACCTCACAACCAATGGAAATTCTCATAGATCAATCCAAAGGGAAGCAGCTCTAAACAAGTTCCGCTTGAAACGCAAAGAAAGATGTTATGAGAAAAAGGTTCGATACGAGAGCAGAAAGAAACTAGCTGAGCAGCGTCCAAGGATAAAAGGACAATTTGTGCGTCAAGTGCCATCTTAA 2004 0.4341 MGEEMLCGEKLVMERQREEEEEEESGTGSRDELRGLMRWEKFLPKMVLRVLLVEADDSTRQIIAALLRKCNYKVASVPDGLKAWEILKGRPGDIDLILTEVDLPSISGYALLTLIMEHEICKNIPVIMMSSQDSVSTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSHKIEATAENNAASNRSSGDAASNRSSGDAACIQRNKELIEKGSDAQSSCTKPDLEDESGHVDKVHEFSPLKCSEAFPSGAKAQEVETCIRLGQTLIMHDSHAGGLNVGICKNGETSTTNGKDADPEHFRSASISSEAHDNHCVQIKSSKEAIDLIGAFHTRANCSLRNSSVDCTGMFDFSPQLDLSLRGSHPSNFENELTEERHTLMHSNASAFKRYTNRKLQASPAVLVDFSNQQREQRTNGEKSISYIATGCNSDNSTPSMQRCIMSPATAQSKESEFATSHSQQGHSLPIPVKGVRFNDLCTPYGSVLPPMFQTQSGPPSMPSPSSVVLLQPTFQVNAFYQSNTKENGSEQLYEPRGQNGNSAPNHIVYTQELRQEHAEDRGHISPATDQSVSSSFCNGNASQLNSIGYGSNCGSSSNVDQVAIVRAASEGKNEDLTTNGNSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRIKGQFVRQVPS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2434g00022 667 Pfam CCT motif 622 664 IPR010402 GO:0005515
Gabi2434g00022 667 SMART REC_2 48 163 IPR001789 GO:0000160
Gabi2434g00022 667 SUPERFAMILY CheY-like 48 178 IPR011006 -
Gabi2434g00022 667 MobiDBLite consensus disorder prediction 10 30 - -
Gabi2434g00022 667 CDD psREC_PRR 50 153 - -
Gabi2434g00022 667 ProSiteProfiles Response regulatory domain profile. 49 167 IPR001789 GO:0000160
Gabi2434g00022 667 Pfam Response regulator receiver domain 50 161 IPR001789 GO:0000160
Gabi2434g00022 667 ProSiteProfiles CCT domain profile. 622 664 IPR010402 GO:0005515
Gabi2434g00022 667 PANTHER TWO-COMPONENT RESPONSE REGULATOR 48 226 IPR045279 GO:0009736
Gabi2434g00022 667 MobiDBLite consensus disorder prediction 177 198 - -
Gabi2434g00022 667 Gene3D - 46 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2434g00022 Gabi-Chr2434 220796 225476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2434g00022 604 667 Response Regulator Gene Family AT5G24470 75.758 4.40e-22 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gabi2434g00022 Response_reg 7.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2434g00022 K12130 - gmx:100777119 1003.43