Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2432g00040 ATGAGCAATTGGTTGGGGTTCTCTCTGACTCCACACTTGAGGATTGATGGAGAATTTGGGAGAGAAAATCAAGACCATGGTGGAGGCTATCCTCATCCTCATCCTCATCCTTCTCATCCTCACTTATCTGTTATGCCTTTACGCTCTGATGGTTCACTTTGTGTTGCTGATTCCTTTAGGCACTCTGTTGCACCTGAAGAAGAATGGAGATATGAAAATGCAATAGCTGGAGGAAATTCAAATGAAGAAGGACCAAAGCTTGAAGACTTCTTGGGTTGTTACTCTAACTCACCTTTGGCTGAGACCAAAGTCTTCTGCCAAGGATCCCAACATGACCAAAACCAAAACCAGAATAGTATTTCCAAAATCAATGTTAACGTGGCCCCAAGCTTTTGCAACAATACAGAGATTGAAACTGGAGAGAATCTCACAAATCCTTCTTCCTTGATCCACTCTTTCCATGCATATAATGATAACCCACATGCCCTCATTCCAAGCAATGGCATGTACAAGTCATGGTTGGCACAAACTCAGTTTTCTGATGGAAAACCTTCAGGTGAGGGAAATGGGTGTAATTTCCAATCTTTGTCCCTGACTATGAGCCCCAGTGTACAAAATGGGGTGGATGCAATTTCACCTGCACAAGTGAATGATGACACTCGAAAAAGGTCCATGTCAAAATCTTTAGCTAGAGAACCTGTGCCTCGCAAATCTATTGATACTTTTGGGCAGAGAACATCTCAATATCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCACTTGTGGGATAATAGTTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGTTTACCTTGGTGGCTATGATAAGGAAGAAAAAGCAGCAAAGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTACAGAGGCGTGACAAGACACCATCAACATGGAAGGTGGCAAGCTCGGATAGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGTACACAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAATAGGTATGATGTGAAGAGAATTTGCTCAAGCTCAACCCTCATTGCTGGAGATCTTGCAAAACGTTCTCCTAAAGACTCAGCTCCAGCCACTGGTGAGGACTTCAATTCGTGTGGTTCATCAACACCTTCTCAGCCACATGCTATTGCTATAACTGAAGGTGAACGCTCTGATGAGTTATCCAACATGGTGTGGAATGCAACCAACAGTGATGAGCAACCACAGAATGAGAGTGGAAATACCAATAATGTCACTGAATCATCAACAAGCAACAAGAATGCTTTGATTCCTCAAAGCCCCAAGTGTTCTGTGGGATTATCCAATGAGTTTGGAGTCAGTGGAGTGGATTATGAACATGAATACTTCACCCTGCATGGACAAAAATATGATGATGGAAACAATGAAAATGACCACATGAACACCAACAGGATTGGAAACTTGGGTTTGGTCAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1713 0.4267 MSNWLGFSLTPHLRIDGEFGRENQDHGGGYPHPHPHPSHPHLSVMPLRSDGSLCVADSFRHSVAPEEEWRYENAIAGGNSNEEGPKLEDFLGCYSNSPLAETKVFCQGSQHDQNQNQNSISKINVNVAPSFCNNTEIETGENLTNPSSLIHSFHAYNDNPHALIPSNGMYKSWLAQTQFSDGKPSGEGNGCNFQSLSLTMSPSVQNGVDAISPAQVNDDTRKRSMSKSLAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAAKAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDINRYDVKRICSSSTLIAGDLAKRSPKDSAPATGEDFNSCGSSTPSQPHAIAITEGERSDELSNMVWNATNSDEQPQNESGNTNNVTESSTSNKNALIPQSPKCSVGLSNEFGVSGVDYEHEYFTLHGQKYDDGNNENDHMNTNRIGNLGLVNQVPMFALWNE 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2432g00040 570 PRINTS Ethylene responsive element binding protein signature 390 410 IPR001471 GO:0003700|GO:0006355
Gabi2432g00040 570 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Gabi2432g00040 570 CDD AP2 349 410 IPR001471 GO:0003700|GO:0006355
Gabi2432g00040 570 ProSiteProfiles AP2/ERF domain profile. 248 314 IPR001471 GO:0003700|GO:0006355
Gabi2432g00040 570 FunFam AP2-like ethylene-responsive transcription factor 349 410 - -
Gabi2432g00040 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 81 484 - -
Gabi2432g00040 570 Pfam AP2 domain 248 306 IPR001471 GO:0003700|GO:0006355
Gabi2432g00040 570 Pfam AP2 domain 349 400 IPR001471 GO:0003700|GO:0006355
Gabi2432g00040 570 SUPERFAMILY DNA-binding domain 349 409 IPR016177 GO:0003677
Gabi2432g00040 570 SUPERFAMILY DNA-binding domain 247 316 IPR016177 GO:0003677
Gabi2432g00040 570 MobiDBLite consensus disorder prediction 429 455 - -
Gabi2432g00040 570 MobiDBLite consensus disorder prediction 478 507 - -
Gabi2432g00040 570 CDD AP2 247 316 IPR001471 GO:0003700|GO:0006355
Gabi2432g00040 570 Gene3D AP2/ERF domain 247 316 IPR036955 GO:0003700|GO:0006355
Gabi2432g00040 570 Gene3D AP2/ERF domain 350 410 IPR036955 GO:0003700|GO:0006355
Gabi2432g00040 570 SMART rav1_2 350 414 IPR001471 GO:0003700|GO:0006355
Gabi2432g00040 570 SMART rav1_2 248 320 IPR001471 GO:0003700|GO:0006355
Gabi2432g00040 570 MobiDBLite consensus disorder prediction 18 41 - -
Gabi2432g00040 570 ProSiteProfiles AP2/ERF domain profile. 350 408 IPR001471 GO:0003700|GO:0006355
Gabi2432g00040 570 FunFam AP2-like ethylene-responsive transcription factor ANT 247 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2432g00040 Gabi-Chr2432 300804 304107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2432g00040 1 437 AP2-EREBP Transcription Factor Family AT1G72570 51.293 6.11e-139 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi2432g00040 AP2 6.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2432g00040 K09285 - gmx:100809762 918.302