LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2432g00018	ATGGTTTGTCTGGGAATAGTAGCAAAAAAAGTAACAGCAGACAACGATTCTGAGGATCTAGTGGTGTCTTTTTCTAGCTCTGCTCCTCAGATAAAGTATGATCTCTTTCTCAACTTTAGAGGTGCAGACATTCGTGAAGGTTTCCTCAGTCATTTGAATAAGACTTTATATCAAAAGCAGATTTTTCCCTTCGTAGATGACATGCTTCCCAAAGGGTGTGAAATATTGGAAGATCTTCTTGGAGCAATTGAAAGATCATTGATTTCATTGGTCATATTCTCTCAAAACTATGCTTCTTCATCTTGGTGTTTGCTAGAGCTTGTGAAAATACTTGAGTGCAAAGAAAAAGATGGACAGATTGTGCTACCCGTTTTCTACAAAGTCGACCCCTCACAAGTACGGCATCAAAAGGGGGCTTATAAAAATGCATTTTCTGAACATGAAAAAAGGCATAGTTTAATCAAGTTGCAAACCTGGAGATCTGCTTTGAAGGAAACTGCTAATTTAGAAGGATTTCATTCTTCAAATTTTCGAAATGAAGCCGAGCTTGTTGAAGAAATAGTTAAATGGGTACAGAAGAGATTGAAACATGTGCACCAAGTTAACTCAAAAGGATTTGTTGGAATTGCAAAGCCAATTTCACATGTAGAATCACTGTTACGGTTAGAGTCAGAAGATGTTCGTGTTATTGGAATTTGGGGTATGGGTGGTATTGGTAAGACAACTATTGCAGAAGAAGTATATAACAGATTGCATGCTGATTACGAAGGGTTTTGTTTTCTGGCTAATGTAAGAGAAGAGTTGGGAAGACAGGGAATAATCTCTTTGAAGACAAAGCTTTTTTCCACACTACTAGGGGAACAAGATTTGAAAATTGAAACCCCAAATGTATTGCCTACTTATGTGGAGAAAAGGCTTCGTCGTATGAAGGTTCTTATTGTTCTCGATGATGTCAATGATTCGGAGCAACTAGAAAGTTTAGTTGGAACAAAGGACAGGTTTAAAAATGGTAGTAGAATCATCATAACTACTAGAGATAAGCAAGTGCTTGCTAAATGGGTTGATGATATATACGAGGTTCAGGCACTGGACTTTGATGAGTCTTTCCGGCTTTTCAATTTGAATGCCTTTGAACATAATCATATTGACAGAGAATACTATGAACTGTCTAAGAGCATGGTCGAGTATGCCAAAGGCGTTCCAGTAGTTCTTAAAGTTTTGGGTCATCTTCTTCGTGGAAAAGATAAAGAAATATGGGAAAGCCAATCAAAAAGGCTCAAAAAAGTGCCCAATAAAAAGGTTCATGATGTTATTAAGATTAGCATTGATGATGATCTTGATCACGATGAGAAGAAGATATTTTTGGATATTGCATGTTTTTTCGATGGATTGAATTTGAATGTTGACAAAATAAAACTTCTATTAAAGGATCGTGATTATTCTGTTGCTGCTGAGTTAGAAAGGTTAAAAGATAAAGCTCTTATAACTATTTCTCAAGAGAATATTGTATCCATGCATAACATTATACAAGAAACCGCTTGGGAGATGGTTCGCCAAGAATCTATTGAAGACCCCGGACACCGAAGTCGACTGCTGGATGCTGATGACATTTATCAAGTGCTGAAAAATAACAAGGGGAGTGAGGCCATTAGAAGCATAGTCCTCAACTCGTCGATGAATCAGGAGCTGCAGTTAAGCCCTCAAGTATTTGCTAAGATGAGCAAACTACAATTTCTTGATTTGTATTGTGATTGGCCTTATAAAGTGTTGTATCTTCCTCAAGGGCTTGAATCTTTGCCAAATGAACTAAGATATCTTCGGTGGGCTTTCTACCCTTTGGAATCCTTGCCATCCAAGTTTTCTGCGGAAAATCTTGTTGAATTGAACTTGCCCTACAGCCGAGTGAAAAAACTTTGGCACCAAGTGCAGGAACTTGAGAATTTAAACACCCTCGTACTGCATTCATCCACAAGCCTGGTGGAACTGCCAGACTTTTCAAAGGCCACAAATCTTAAAGTCATAGATCTCCGTTTTTGTCTAGAGCTGACTAGTGTGCATCCATCTGTTTTCTCTATCAACAAGCTTGAGAAATTGGATCTAGGTGGATGCATTTCCCTTTCAACCCTTGGAAGCAATATCCATCTGAGCTCCCTTCGTTTTCTCTCCCTCAATGGCACGGGTATCAAACAACTACCCTCATCTATTGAACTTCAAAGCAAACTTGAAAAGCTAAATCTAGCATACACTTACATTGAGAACTTGCCTGCAAGCATCAAGCATCTTACAAAGCTTCGACATCTAGATATTCAGCACTGTAGGGAGCTTCCGATTATACCGGAGCTTCCCCCATCACTTGAAATACTAGATGCCAGTGGCTGCATATCACTGGATACTGTGTTGTTCCCTTCAACCGCTAGTGAACAACTGAATGAAAACAAGAAAAGGGTAGCCTTCTGGAATTGCTTGAAATTGGATGAACATTCTCTCAAGGCTATTGCACTGAATGCGCAAGTTAACATGATGAAATTTGCATTCCAACATTTATCCACATTTGGTCGTGATTATGATGCTCAAATCACTAATGTTTATGATGCTCAAAGCACTTATGTGTATCCGGGAAGCAAAGTTCCAGAGTGGCTGGTGTATGGGACAACACAAGACTCCTTAACTATTGATCTCTCTTTTCCTCCGCATTCCCCTGAGATGGTCTTCATTTTTTGCTTCATAGTTCCGCAGGTTCAATCAGAGGGTTTGTTTTTGAAATTTAAGATCAGTGTTGGTGAAGATGAAGGTAACACTGTGTACCTGGACAGACCACATCATGGAATTATATCGGATCATGTGTATCTAATGTACGACCAAGGATGTTCCAGCTACCTGAATAGCCAAGCCAAACATCAGCCAAGGTTTAAAATCAAGGTTACAGCAGCATCACGAACACTGACATCACAGTACGTGCCGTTGCAGTTAAGAGGGTTTGGGGTCAGCCCGATAGATGCCTCACAATATCTCAGTTTTCTTCAACAAATATTTGAATGA	3039	0.3926	MVCLGIVAKKVTADNDSEDLVVSFSSSAPQIKYDLFLNFRGADIREGFLSHLNKTLYQKQIFPFVDDMLPKGCEILEDLLGAIERSLISLVIFSQNYASSSWCLLELVKILECKEKDGQIVLPVFYKVDPSQVRHQKGAYKNAFSEHEKRHSLIKLQTWRSALKETANLEGFHSSNFRNEAELVEEIVKWVQKRLKHVHQVNSKGFVGIAKPISHVESLLRLESEDVRVIGIWGMGGIGKTTIAEEVYNRLHADYEGFCFLANVREELGRQGIISLKTKLFSTLLGEQDLKIETPNVLPTYVEKRLRRMKVLIVLDDVNDSEQLESLVGTKDRFKNGSRIIITTRDKQVLAKWVDDIYEVQALDFDESFRLFNLNAFEHNHIDREYYELSKSMVEYAKGVPVVLKVLGHLLRGKDKEIWESQSKRLKKVPNKKVHDVIKISIDDDLDHDEKKIFLDIACFFDGLNLNVDKIKLLLKDRDYSVAAELERLKDKALITISQENIVSMHNIIQETAWEMVRQESIEDPGHRSRLLDADDIYQVLKNNKGSEAIRSIVLNSSMNQELQLSPQVFAKMSKLQFLDLYCDWPYKVLYLPQGLESLPNELRYLRWAFYPLESLPSKFSAENLVELNLPYSRVKKLWHQVQELENLNTLVLHSSTSLVELPDFSKATNLKVIDLRFCLELTSVHPSVFSINKLEKLDLGGCISLSTLGSNIHLSSLRFLSLNGTGIKQLPSSIELQSKLEKLNLAYTYIENLPASIKHLTKLRHLDIQHCRELPIIPELPPSLEILDASGCISLDTVLFPSTASEQLNENKKRVAFWNCLKLDEHSLKAIALNAQVNMMKFAFQHLSTFGRDYDAQITNVYDAQSTYVYPGSKVPEWLVYGTTQDSLTIDLSFPPHSPEMVFIFCFIVPQVQSEGLFLKFKISVGEDEGNTVYLDRPHHGIISDHVYLMYDQGCSSYLNSQAKHQPRFKIKVTAASRTLTSQYVPLQLRGFGVSPIDASQYLSFLQQIFE	1012

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2432g00018	1012	Pfam	NB-ARC domain	223	430	IPR002182	GO:0043531
	Gabi2432g00018	1012	Pfam	TIR domain	32	201	IPR000157	GO:0007165
	Gabi2432g00018	1012	PRINTS	Disease resistance protein signature	305	319	-	-
	Gabi2432g00018	1012	PRINTS	Disease resistance protein signature	759	775	-	-
	Gabi2432g00018	1012	PRINTS	Disease resistance protein signature	397	411	-	-
	Gabi2432g00018	1012	PRINTS	Disease resistance protein signature	229	244	-	-
	Gabi2432g00018	1012	Gene3D	-	194	361	IPR027417	-
	Gabi2432g00018	1012	FunFam	Disease resistance protein (TIR-NBS-LRR class)	29	197	-	-
	Gabi2432g00018	1012	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	33	795	IPR044974	GO:0006952
	Gabi2432g00018	1012	SUPERFAMILY	"Winged helix" DNA-binding domain	432	542	IPR036390	-
	Gabi2432g00018	1012	Gene3D	-	30	193	IPR035897	-
	Gabi2432g00018	1012	Gene3D	Ribonuclease Inhibitor	539	708	IPR032675	-
	Gabi2432g00018	1012	Gene3D	-	362	445	IPR042197	-
	Gabi2432g00018	1012	SUPERFAMILY	L domain-like	552	828	-	-
	Gabi2432g00018	1012	ProSiteProfiles	TIR domain profile.	31	195	IPR000157	GO:0007165
	Gabi2432g00018	1012	Gene3D	Ribonuclease Inhibitor	709	826	IPR032675	-
	Gabi2432g00018	1012	SUPERFAMILY	Toll/Interleukin receptor TIR domain	25	171	IPR035897	-
	Gabi2432g00018	1012	SMART	till_3	32	169	IPR000157	GO:0007165
	Gabi2432g00018	1012	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	192	457	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2432g00018	Gabi-Chr2432	160186	164805	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2432g00018	24	805	WRKY Transcription Factor Family	AT4G12020	35.323	1.68e-121	407

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2432g00018	-		-	gmx:100802823	1403.65