Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2432g00016 ATGGCATATTCTTTTTCCACAGCTGAGCAAATAAAATATGTTGTTGTATTTGCTTGTCTCTTGCTTCTTTTGAAATTGGAGGGAATAGTGGCGGCCAAAAAAGTAACAGCAGACAACGATTCTAAGGATCTAGTGGTGTTTTTTTCTGGCTCTGCTCCTCAGATAAAGTATGATGTCTTTCTCAACTTTAGAGGTGCAGACATTCGTGAAGGTTTCCTTAGTCATTTGAATAAAACTTTATATCAAAAGCAGATTTTTCCCTTCGTAGATGACAAGCTCCCCAAAGGGGGTGAAATATCGAAAGATCTTCTTGGAGCAATTGAAAGATCATTGATTTCATTGGTCATATTCTCACCAAACTATGCTTCTTCATCTTGGTGTTTGCTAGAGCTTGTGAAAATAGTTGAGTGCAGAGCAAAAGATGGACAGATTGTGCTACCCGTTTTCTACAAAGTCGATCCCTCACAAGTACGGCATCAAAAGGGGGCTTATAAAAATGCACTTTCTGAACATGAAAAAGGGCATAGTTTAATCAGGGTGCAAACTTGGAGATCTGCTCTGAACGAAGCTGCTAATTTAGAAGGATTTCATTCTTCAAATTTTCGGAATGAAGCCGAGCTTGTTGAAGATATAGTTAAATGGGTACAGAAGAGATTGAAACATGTGCACCAAGTTAACTCAAAAGGATTTGTTGGAATTGCAAAACCAATTTCACATGTAGAATCACTGTTACGGTTAGAGTCAGAAGATGTTCGTGTTATTGGGATTTGGGGTATGGGTGGTATTGGTAAGACAACTATTGCAGAAGAAGTATATAACAGATTGCATGCTGATTATGAAGGGTATTGTTTTCTGGCAAATGTAAGAGAAGAGTTGGGAAGACAGGGAATAATCTCTTTAAAGACAAAGCTTTTTTCCACACTACTATGGGAACAAGACTTGAAAATTGAAACCCCAAATGTATTGCCTACTTATGTGGAGAAAAGGCTTCGTCGTATGAAGGTTCTTATTGTTCTTGACGATGTCAATGATTCGGAGCAACTAGAAAGTTTAGTTGGAACAAAGGACAGGTTTAAAAATGGTAGTAGAATCATCATAACTACTAGAGATAAGCAAGTGCTTGCTAAATGGGTTGATGATATATACAAAGTTGAGGCACTGGACTTTGATGAGTCTTTCCGGCTTTTCAAGTTGAATGCCTTTGAACATAATCATATTGACATAGAATACTATGAACTGTCTAAGAGCATGGTCGATTATGCCAAAGGCGTTCCAGTAGTTCTTAAAGTCTTGGGTCATCTTCTTCGTGGAAAAGATAAAGAAATATGGGAAAGCCAATCAAAAAGGCTCAAAAAAGTGCCCAATAAAAAGGTTCATGATGTTATTAAGATTAGCATTGATGAGGATCTTGATCATGATGAGAAGAAGATATTTTTGGATATTGCATGTTTTTTCGATGGATTGAATTTGAATGTTGACAAAATAAAACTTCTATTAAAGGATCGTGATTATTCTGTTGCTGCTGCGTTAGAAAGGTTAAAAGATAAAGCTCTTATAACTATTTCTCAAAAGAATATTGTATCCATGCATAACATTATACAAGAAACAGCTTGGGAGATGGTTCGCCAAGAATCTATTGAAGACCCCGGACACCGAAGTCGACTGTTGGATACTGATGACATTTATCAAGTACTGAAAAATAACAAGGGGAGTGAGGCCATCAGAAGCATAGTCCTCAACTCGTCGATGATTAAGGAGCTGCAGTTAAGCCCTCAAGTATTTGCTAAGATGAGCAAACTACAATTTCTTGATTTGTATTGTGATTGGCCTTATAAAGTGTTGTATCTTCCTCAAGGGCTTGAATCTTTGCCAAATGAACTACGATATCTTCGGTGGGCTTCCTACCCTTTGGAATCCTTGCCATCCAAGTTTTCTGCGGAAAATCTTGTTGAATTGAACTTGCCCTACAGCCGAGTGAAAAAACTTTGGCACCAAGTGCAGGAACTTGAGAATTTAAACACCCTCGTACTGCATTCATCCACAAGCCTGCTGGAACTGCCAGACTTTTCAAAGGCCACAAATCTTAAAGTCATAGATCTCCGTTTTTGTCTAGAGCTGACTAGTGTGCATCCATCCGTTTTCTCTCTCAACAAGCTTGAGAAATTGGATCTAGGTGGATGCATTTCCCTTTCAACCCTTGGAAGCAATATCCATCTGAGCTCCCTTCGTTTTCTCTCCCTCAATGGCACGGGTATCAAACAACTACCCTCCTCTATTGAACTTCAAAGCAAACTTCAAAAGCTAAATCTAGCACGCACTTACATTGAGAACTTGCCTACAAGCATCAAGCATCTTACAAAGCTTCGACATCTAGATATTCGCCACTGTAGCGAGCTTCCGACTATACCTGAGCTTCCCCCATCACTTGAAATACTAGATGCCAGTGGCTGCATATCACTGGAGAGTGTGTTGTTCCCTTCAACCACTAGTGAACAACTGAATGAAAACAAGAAAAGGGTAGCCTTCTGGAATTGCTTGAAATTGGATGAACATTCTCTCAGGGCTATTGAGCTGAATGCGCAAGTTAACATGATGAAATTTGCATTCCAACATTTATCCACATTTGGTCGTGATTATGATGCTCAAATCACTAATGTTAATGCTGCTCAAAGCACTTATGTGTATCCGGGAAGCAAAGTTCCAGAGTGGCTGGTGTATGGGACAACACAAGACTCCCTAACTATTGATCTCTCTTTTGGTCCGCAGTCCCCTGAGATGGGCTTCATTTTTTGCTTCGTAGTTCCGCAGGTTCAATCAGAGGGTTTGTTTTTTAAATTTAAGATCAGTGTTGGTGAAGATGAAGGTAACACTGTGTACCTGGACAGACCACGTCATGGAATTATATCGGATCATGTGTATCTAATGTATGACCAAGGATGTTCCAGCTACCTGAATAGCCAAGCCAAACATCAGCCAAGGTTTAAAATCAAGGTTACAGCAGCATCACGAACACTGACATCACAGTACGTGCCATTGCTGTTAAGAGGGTTTGGGGTCAGCCCAGTAGATGCCTCACAATATCTCAGTTTTCTTCAACAAATATTTGAATGATAGTACTATTCCAACATACCAATTTTTACTGATATCATGATGGCGAATTCTAGGAGTAGTTCACGAGATTGCTTTGTTACGGGTCCATTGAATTGGGGAATTTGTGCTTGTTGTCACGTCATCTATGATATTGTAAGTAGGGGTGCTAAACAGACCAAAGCCTTTCAGGGGCCTTTGGCTCGCCTCGTGAAGAAGTTGCCATTGTCTGTTTTTGGCTTCGGACATACTGACAGAAGCAAGGAGAAGGTAGAAGAAGGTTCCTCATTTCTTGTGCGCTGA 3390 0.3985 MAYSFSTAEQIKYVVVFACLLLLLKLEGIVAAKKVTADNDSKDLVVFFSGSAPQIKYDVFLNFRGADIREGFLSHLNKTLYQKQIFPFVDDKLPKGGEISKDLLGAIERSLISLVIFSPNYASSSWCLLELVKIVECRAKDGQIVLPVFYKVDPSQVRHQKGAYKNALSEHEKGHSLIRVQTWRSALNEAANLEGFHSSNFRNEAELVEDIVKWVQKRLKHVHQVNSKGFVGIAKPISHVESLLRLESEDVRVIGIWGMGGIGKTTIAEEVYNRLHADYEGYCFLANVREELGRQGIISLKTKLFSTLLWEQDLKIETPNVLPTYVEKRLRRMKVLIVLDDVNDSEQLESLVGTKDRFKNGSRIIITTRDKQVLAKWVDDIYKVEALDFDESFRLFKLNAFEHNHIDIEYYELSKSMVDYAKGVPVVLKVLGHLLRGKDKEIWESQSKRLKKVPNKKVHDVIKISIDEDLDHDEKKIFLDIACFFDGLNLNVDKIKLLLKDRDYSVAAALERLKDKALITISQKNIVSMHNIIQETAWEMVRQESIEDPGHRSRLLDTDDIYQVLKNNKGSEAIRSIVLNSSMIKELQLSPQVFAKMSKLQFLDLYCDWPYKVLYLPQGLESLPNELRYLRWASYPLESLPSKFSAENLVELNLPYSRVKKLWHQVQELENLNTLVLHSSTSLLELPDFSKATNLKVIDLRFCLELTSVHPSVFSLNKLEKLDLGGCISLSTLGSNIHLSSLRFLSLNGTGIKQLPSSIELQSKLQKLNLARTYIENLPTSIKHLTKLRHLDIRHCSELPTIPELPPSLEILDASGCISLESVLFPSTTSEQLNENKKRVAFWNCLKLDEHSLRAIELNAQVNMMKFAFQHLSTFGRDYDAQITNVNAAQSTYVYPGSKVPEWLVYGTTQDSLTIDLSFGPQSPEMGFIFCFVVPQVQSEGLFFKFKISVGEDEGNTVYLDRPRHGIISDHVYLMYDQGCSSYLNSQAKHQPRFKIKVTAASRTLTSQYVPLLLRGFGVSPVDASQYLSFLQQIFEXXYYSNIPIFTDIMMANSRSSSRDCFVTGPLNWGICACCHVIYDIVSRGAKQTKAFQGPLARLVKKLPLSVFGFGHTDRSKEKVEEGSSFLVR 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2432g00016 1129 Pfam NB-ARC domain 247 454 IPR002182 GO:0043531
Gabi2432g00016 1129 Pfam TIR domain 56 225 IPR000157 GO:0007165
Gabi2432g00016 1129 Gene3D - 218 382 IPR027417 -
Gabi2432g00016 1129 Gene3D - 386 470 IPR042197 -
Gabi2432g00016 1129 SUPERFAMILY L domain-like 577 852 - -
Gabi2432g00016 1129 PRINTS Disease resistance protein signature 253 268 - -
Gabi2432g00016 1129 PRINTS Disease resistance protein signature 421 435 - -
Gabi2432g00016 1129 PRINTS Disease resistance protein signature 329 343 - -
Gabi2432g00016 1129 PRINTS Disease resistance protein signature 783 799 - -
Gabi2432g00016 1129 FunFam Disease resistance protein (TIR-NBS-LRR class) 53 221 - -
Gabi2432g00016 1129 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 821 IPR044974 GO:0006952
Gabi2432g00016 1129 Gene3D - 54 217 IPR035897 -
Gabi2432g00016 1129 SUPERFAMILY "Winged helix" DNA-binding domain 456 566 IPR036390 -
Gabi2432g00016 1129 SMART till_3 56 193 IPR000157 GO:0007165
Gabi2432g00016 1129 Gene3D Ribonuclease Inhibitor 507 709 IPR032675 -
Gabi2432g00016 1129 Gene3D Ribonuclease Inhibitor 710 852 IPR032675 -
Gabi2432g00016 1129 ProSiteProfiles TIR domain profile. 55 219 IPR000157 GO:0007165
Gabi2432g00016 1129 SUPERFAMILY Toll/Interleukin receptor TIR domain 52 195 IPR035897 -
Gabi2432g00016 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 481 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2432g00016 Gabi-Chr2432 146858 154899 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2432g00016 57 912 WRKY Transcription Factor Family AT4G12020 33.639 6.19e-116 394