Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2432g00014 ATGTATCTTTTCCCTGGGATTATGATAACTGGAGCAGTGGTAATTGCTTTCACATTTTTCAGTCTCACCATGCTAGGATGGTGCACTTATACCCATCACATACCATCCCTTCCTACAACAGTCGTATCTTTTGATGACAGGTTATCTCCTTGCATGAATTTAGAGTCACATTCAATTACATTTCAGTATAAGGCTGCAGAAGGCACAGTAAGCCAGACAGAATGTGTTATCTGCTTGACAGGCTTCGAAGAAAAGGAAAGTGTTCGGAAGCTTCACAAGTGCACGCACATCTTCCATACATCTTGCATTGATAAGTGGCTTGGCTCTCATTCTGGCTGCCCATTGTGCCGCACTCAGGTTGACAAAGTGGCTTCCCCAAATGATTAG 387 0.4341 MYLFPGIMITGAVVIAFTFFSLTMLGWCTYTHHIPSLPTTVVSFDDRLSPCMNLESHSITFQYKAAEGTVSQTECVICLTGFEEKESVRKLHKCTHIFHTSCIDKWLGSHSGCPLCRTQVDKVASPND 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2432g00014 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 125 IPR013083 -
Gabi2432g00014 128 SMART ring_2 75 116 IPR001841 -
Gabi2432g00014 128 Pfam Ring finger domain 74 117 IPR001841 -
Gabi2432g00014 128 ProSiteProfiles Zinc finger RING-type profile. 75 117 IPR001841 -
Gabi2432g00014 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 122 - -
Gabi2432g00014 128 SUPERFAMILY RING/U-box 74 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2432g00014 Gabi-Chr2432 114744 115130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2432g00014 58 126 C3H Transcription Factor Family AT5G17600 54.286 4.00e-20 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2432g00014 - - gmx:102661636 210.69