Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi242g00007 ATGACTTTCTTTCCTCTATTTCCTCTCCTTTTATTCCTCCCTTTCTGCTTTACATCATTTGCTTTTGGAGCCACTCTACAAGAAGATGAAGTGCAAGCTCTGAAAGACATAGCTAACACAATTGGGAAGCAGAATTGGGACTTCAGCGTAGATCCATGTAGCGGAAAGAGTAACTGGACATCACCTATTCAATTACAAGCATCAGAAAATGCTGTCAAATGCAATTGCTCTTTTAACAATAACACTCTCTGCCATGTTGTTAGCATTGTTTTAAAAGCACAAAATCTTTCTGGTACTCTCCCACCGGATCTTGTCAAGTTAGCTTATCTCCAAGAAATTGACCTCACCCTCAACTATCTGAATGGTACAATCCCTAAACAATGGGCCACCTTAAAACTAGTCAACGTTTCCTTCTATGGGAACCGTCTAACGGGTCCAATTCCAAAGGAGCTTGGAAGCATCACCACTCTCAAAAGTTTGGTATTGGAGTTCAACCAATTGTCTGGAAATCTTCCTCCAGAGCTTGGGAATCTTTCCCAGATTGAAAGACTGCTTCTTACCTCCAACAACTTCACTGGAGAGTTACCTGCAACTTTTGTTAGGCTCACTGCATTGAAGCATTTTCGAATTGGCGACAATCAATTCTCTGGACCAATACCCAATTTTATACAGAACTGGACAAATCTTGAGATGCTCGTGATGCAAGGGAGTGGTTTGAGTGGGCCAATTCCTTCTGGAATTTCACTTTTGAAAAACCTTACTGACTTGAGAATTACTGACTTGAATGGATCTGATTCGCCTTTTCCACAACTGAATAATATGACAAATTTGGTGCAACTAATCTTGAGAAGTTGCAATATTATTGGAGAAATGCCCGAATATATTGGAATGTTGACTAATCTGAAAGTGATAGATCTCAGCTACAACAAATTAAGTGGTCAAATCCCGATAAGCATGGACGGTTTAAAGAATTTGTATATGCTCGTTTTATCAGGGAATCTTATGTCTGGCTCGCTGCCTGACTGGATAGATAAACCAGACTTTGTAGATCTCTCAAATAACAACTTCAGTATTATAAACTTAGAGCAGCAGACTTGTCAACAAGGAAGCGTGAACTTGTTTGCCGCCTCTTTGAACGGCAACAACTTTGCTAATTTGTTCTTCCCCCCTCCGTTTTATCTTCTCAGAGGAAATATTTCATGTTTGGCAAACTATCACTGTCCTAAAACTTGGTACTCAATCAATATAAATTGTGGTGGAAAGCTTGTAACTTCCAATGGAAATAAGACATATGATGATGATTCGAGTGAGATGGGGCCAGCAAGGTTTCGTCAAACTGGAACGAATTGGGCAATTATCACTGCTGGTCACTTCTTTGATAGTGGTCAGCCTGACTACTATACATGGTCTAATACAACAAAGCTTGCTGTGGACAATGCTGAACTGTACATGGATGCACGTGTTTCTCCAAATTCTCTGACTTATTATGGATTTTGTCTTGGAAATGGAAACTACACAGTGAATCTCCATTTTGCAGAAATAATGTTCACTAATGATACAACATATAGTAGCTTGGGAAGGCGTGTATTTGACATCTATATTCAGAGAAAGTTGGTGGCAAAGGATTTCAATATTGTAAAAGAAGCAGGGGGTGTTGGTAAGGCAGTCATTAAAACGTTTACTGCTGTTGTGACTAGTAATGCCTTAGAGATCCGCTTATATTGGGCTGGGAAAGGAACAACTACTATCCCATTTGGATCAGTATATGGTCCTCTTATATCAGCTATATCTGTTGATCCCGACTTTACTCCCCCGTTGGAAAATAATGGAAGAAGCATACCTGTAAGGGTTGTGGTTGCAATTGTGGCTGCAGGAGTAATTGTTATCATCTTGGTAATTGGTATACTATGGTGGAAGGGCTGTTTAAGACTAAAAAGTTCAAGGGCAGGAGAGCTAAAGGGTTTAGGTTCACAAACTGGCTTATTTACATTGCGGCAAATCAAAGCAGCAACAAACAACTTTGATGAATCCTTCAAGATTGGAGAAGGAGGGTTTGGTCCTGTTTACAAGGGCACTCTGTCAGATGGTACAATAGTAGCAGTTAAGCAGCTTTCTTCTAAATCAGCGCAAGGGAATCGTGAATTTATAAATGAGATAGGAATGATTTCTGCTCTGCAACACCCTAATTTAGTCAAGCTCTACGGCTTTTGTATGGAGAAGGATCAATTGTTGCTGATATATGAATACATGGAAAACAATAGCCTTGCTAATGCTTTATTTGTCAGAAAAGAAGACCCAGAGAAACGTCAATTGAGATTGGATTGGCAAACAAGGCAGAGAATTTGTGTTGGTATTGCTAAAGGTTTAGCTTACCTTCATGAAGAGTCAAGACTAAAGATCGTTCACAGGGACATCAAAGCCACTAATATACTGCTGGATAAAGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCTAAGCTCAATGAAGAGGACAATACCCACATAAGCACCAGAATAGCTGGCACTTATGGGTACATGGCTCCTGAGTATGCAATGCATGGCTATTTGACGGACAAAGCAGATGTTTATAGTTTTGGAATTGTTGCTTTGGAGATTGTTAGTGGAACGCACAACTCCAATAGCCATCCTAAAGAAGAATGCTTCTCTCTTCTTGATTGGGTGCGTCTCTTGAAAGAAAAAGGTAATATAACGGAACTTGTTGATTGGAGGTTGGGTGAAGACTTCAACAAAGAAGAGGTAATGGTGATGATCAATGTGGCTCTTCTGTGCACCAGTTTCTCTCCGATGCTCAGGCCCACCATGTCTTCAGTTGTAAGCATGCTTGAAGGAAAAACTGTTGTTCAAGAGGTGGTGTCAGCCACAAGTGAGGAATTGGATGATAAGAAATTTGAAGTGATGCGACAGTATTACCAAAAGAGAGGAGAAAATAGCTTAAGAGAGACTCAGAGCCAGAGTATCTCAACAGATGAATCTAATGCATTTATAGGTGATACAGATTCTTCTTATTGGGAAAACAGAAATTAA 3048 0.3993 MTFFPLFPLLLFLPFCFTSFAFGATLQEDEVQALKDIANTIGKQNWDFSVDPCSGKSNWTSPIQLQASENAVKCNCSFNNNTLCHVVSIVLKAQNLSGTLPPDLVKLAYLQEIDLTLNYLNGTIPKQWATLKLVNVSFYGNRLTGPIPKELGSITTLKSLVLEFNQLSGNLPPELGNLSQIERLLLTSNNFTGELPATFVRLTALKHFRIGDNQFSGPIPNFIQNWTNLEMLVMQGSGLSGPIPSGISLLKNLTDLRITDLNGSDSPFPQLNNMTNLVQLILRSCNIIGEMPEYIGMLTNLKVIDLSYNKLSGQIPISMDGLKNLYMLVLSGNLMSGSLPDWIDKPDFVDLSNNNFSIINLEQQTCQQGSVNLFAASLNGNNFANLFFPPPFYLLRGNISCLANYHCPKTWYSININCGGKLVTSNGNKTYDDDSSEMGPARFRQTGTNWAIITAGHFFDSGQPDYYTWSNTTKLAVDNAELYMDARVSPNSLTYYGFCLGNGNYTVNLHFAEIMFTNDTTYSSLGRRVFDIYIQRKLVAKDFNIVKEAGGVGKAVIKTFTAVVTSNALEIRLYWAGKGTTTIPFGSVYGPLISAISVDPDFTPPLENNGRSIPVRVVVAIVAAGVIVIILVIGILWWKGCLRLKSSRAGELKGLGSQTGLFTLRQIKAATNNFDESFKIGEGGFGPVYKGTLSDGTIVAVKQLSSKSAQGNREFINEIGMISALQHPNLVKLYGFCMEKDQLLLIYEYMENNSLANALFVRKEDPEKRQLRLDWQTRQRICVGIAKGLAYLHEESRLKIVHRDIKATNILLDKDLNPKISDFGLAKLNEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGTHNSNSHPKEECFSLLDWVRLLKEKGNITELVDWRLGEDFNKEEVMVMINVALLCTSFSPMLRPTMSSVVSMLEGKTVVQEVVSATSEELDDKKFEVMRQYYQKRGENSLRETQSQSISTDESNAFIGDTDSSYWENRN 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi242g00007 1015 Pfam Malectin domain 413 596 IPR021720 -
Gabi242g00007 1015 SUPERFAMILY Protein kinase-like (PK-like) 658 953 IPR011009 -
Gabi242g00007 1015 Pfam Protein kinase domain 677 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi242g00007 1015 SUPERFAMILY L domain-like 79 356 - -
Gabi242g00007 1015 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 30 189 - -
Gabi242g00007 1015 ProSiteProfiles Protein kinase domain profile. 674 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi242g00007 1015 CDD STKc_IRAK 680 951 - -
Gabi242g00007 1015 MobiDBLite consensus disorder prediction 983 1015 - -
Gabi242g00007 1015 Gene3D Ribonuclease Inhibitor 189 257 IPR032675 -
Gabi242g00007 1015 Gene3D - 411 600 - -
Gabi242g00007 1015 Gene3D Phosphorylase Kinase; domain 1 640 749 - -
Gabi242g00007 1015 Gene3D Ribonuclease Inhibitor 27 188 IPR032675 -
Gabi242g00007 1015 SMART serkin_6 674 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi242g00007 1015 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 195 262 - -
Gabi242g00007 1015 Pfam Leucine rich repeat 276 334 IPR001611 GO:0005515
Gabi242g00007 1015 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 411 601 - -
Gabi242g00007 1015 Gene3D Ribonuclease Inhibitor 258 372 IPR032675 -
Gabi242g00007 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672|GO:0006468
Gabi242g00007 1015 FunFam Putative LRR receptor-like serine/threonine-protein kinase 750 961 - -
Gabi242g00007 1015 Gene3D Transferase(Phosphotransferase) domain 1 750 975 - -
Gabi242g00007 1015 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 988 - -
Gabi242g00007 1015 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 643 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi242g00007 Gabi-Chr242 110520 135016 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi242g00007 20 983 Receptor kinase-like Gene Family AT1G53420 53.696 0.0 994
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi242g00007 Pkinase 4.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi242g00007 - - gmx:100786496 1370.14