Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi242g00006 ATGAGTGCCTTCTTCCCTCGATTCCCCTTTCTTTTTCTCTTCCCTCTTTGCTTTGCATCATTTGCTTTTGGAGCCACTCTGCAAGAAGATGAAGTGCAAGCTCTGAAAGACATAGGTAACACAATTGGGAAGAAAAATTGGGACTTCAGTGTAGATCCATGTAGCGGAAAGAGTAACTGGAGGTCGCTTGCTCAATTGCAAGGATCAGAAAATGCTGTCACTTGTAATTGCTCTTTTGCCAATCACACTGTTTGCCATGTCGTCAGCATTGTTTTGAAAGCTCAAAATCTTTCGGGTAGTCTCCCCCCCGAGCTTGTGAGGTTGCCTTATCTCCAAGAAATTGACCTCACCCTCAACTACCTTAATGGTACAATCCCTAAACAATGGGCCACCTTAAATCTTGTCAACATTTCCTTTTATGGAAATCGTGTAACAGGTCCAATACCAAAGGAGCTTGGAAACATCACCACTCTCAAAAGTTTGGTATTGGAGTTCAATCAATTATCAGGAAATCTTCCTCCAGAACTTGGGAATCTTACCCACCTTGAAAGACTGCTTCTTACCTCCAATAATTTCACTGGAGAGTTACCTGCAACATTTTCTAGCCTTACTACATTGAAGCATGTTCGAATTGGCGACAATCAATTCTCTGGAGCACTACCCAATTTTATACAGAGCTGGATAAATCTTGAGATACTCGTGATCCAAGGGAGTGGTTTGAGTGGGCCATTTCCTTCTGGAATTTCAATTCTGCGAAACCTTACTGATTTGAGAATTACTGACTTGAATGGATCTGATTCACCTTTTCCACAACTTAATAATATGACAAATTTGGAAACACTAATATTGAGGAGTTGCAATATTATTGGAACCTTGCCTGAATATCTTGGAAACTTGACTAGTCTGCAAGTATTGGACCTCAGCTACAACAAATTAAGTGGACCAATTCCGAGCAGTTTTGATGGTCTACAGAACATGAATATGCTATTTTTAGCTGGGAATCTTCTCACAGGATCGCTGCCTCAGTGGATAGATAAACCAGACTTTGTTGATCTCTCTTATAACAACTTCAGCATCAGAAACATTGAGCAGCCGACTTGTCAACAGGGAAGCGTGAACTTGTTTGCATCCTCCTTGAAAGGAAACAGCTTAGGAAATGTTTCCTGTTTGTCAAACATTCAATGCCCTAAAACTTCGTACTCTCTTTATATAAATTGTGGTGGAAAGCTTGTAACTTCTTATGGAAATAAGACATACGATGATGACTCGGGTGAGACTGGACCAGCAAGATTTCGTCAAAGTGGAACAAACTGGGCACTTATCAATGCTGGTCATTTCTTTGATAGTGGTCGCTCAGACTACTATAAGTGGTCTAATACAACTAAGCTTGCGGTGGATAATGCTAATCTGTACATGGATGCCCGTGTTTCTCCTAATTCTTTGACTTACTATGGATTTTGCCTGGGAAATGGAAACTACACAGTAAATCTTCATTTTGCAGAAATAATGTTCACTGATGATAAAACATATAGCAGCCTTGGAAGACGTGTATTTGACATCTATGTTCAGAGAAAGTTGGTAGTTAAGGATTTCAATATTGCAAAAGAAGCAGGGGGTGTTGGTGAGGCAGTCATAAAAAATTTCACTGCTGTTGTGACTAGTAATGCTTTGGAGATCCGCTTATATTGGGCTGGGAAAGGGACAACTTCTATCCCATTTGGATCAGTTTATGGTCCACTTATATCAGCTATATCAGTTGATCCTGACTTTACACCACCATCGGAAAATGGTAATAGCATACCTGTAGGGGTTGTGGTTGCAATTGTGGTTTCTGGAGCAATTATTATCATCTTGGTAATTGGTATACTGTGGTGGAAGGGCTGTTTAGGACTGAAAAGATCAGTGGCCAGAGAGCTAAAGGATTTAGAATCAAAAACTGGCTTATTTACCTTACGACAAATCAAAGCAGCAACAAACAACTTCGATAAAGCCTTCAAGATTGGAGAAGGAGGATTTGGTCCCGTTTACAAGGGCATTTTGTCAGATGGCACAATAGTAGCTGTTAAGCAGCTTTCTTCTAAATCAAGGCAAGGGAATCGTGAATTCATAAATGAGATAGGCCTGATTTCTGCTTTGCAACACCCGTGTCTAGTTAAGCTTTATGGCTGTTGTATGGAGGAGGATCAATTGTTGCTGATATATGAATACATGGAAAACAATAGCCTTGCTCGTGCTTTATTTGACATAAATGACGAGCCTGAGAAATGTCAATTGAAATTGGACTGGCCAACAAGGCAGAGGATTTGTGTTGGTATTGCTAAAGGCTTGGCATACCTTCATGAAGAGTCAAGACTGAAGATAGTTCATAGGGACATCAAGGCCACAAATGTTTTGCTGGATAAAGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTCAATGAACAGGACAATACCCACATAAGCACCAGAATAGCTGGCACTTAG 2493 0.4047 MSAFFPRFPFLFLFPLCFASFAFGATLQEDEVQALKDIGNTIGKKNWDFSVDPCSGKSNWRSLAQLQGSENAVTCNCSFANHTVCHVVSIVLKAQNLSGSLPPELVRLPYLQEIDLTLNYLNGTIPKQWATLNLVNISFYGNRVTGPIPKELGNITTLKSLVLEFNQLSGNLPPELGNLTHLERLLLTSNNFTGELPATFSSLTTLKHVRIGDNQFSGALPNFIQSWINLEILVIQGSGLSGPFPSGISILRNLTDLRITDLNGSDSPFPQLNNMTNLETLILRSCNIIGTLPEYLGNLTSLQVLDLSYNKLSGPIPSSFDGLQNMNMLFLAGNLLTGSLPQWIDKPDFVDLSYNNFSIRNIEQPTCQQGSVNLFASSLKGNSLGNVSCLSNIQCPKTSYSLYINCGGKLVTSYGNKTYDDDSGETGPARFRQSGTNWALINAGHFFDSGRSDYYKWSNTTKLAVDNANLYMDARVSPNSLTYYGFCLGNGNYTVNLHFAEIMFTDDKTYSSLGRRVFDIYVQRKLVVKDFNIAKEAGGVGEAVIKNFTAVVTSNALEIRLYWAGKGTTSIPFGSVYGPLISAISVDPDFTPPSENGNSIPVGVVVAIVVSGAIIIILVIGILWWKGCLGLKRSVARELKDLESKTGLFTLRQIKAATNNFDKAFKIGEGGFGPVYKGILSDGTIVAVKQLSSKSRQGNREFINEIGLISALQHPCLVKLYGCCMEEDQLLLIYEYMENNSLARALFDINDEPEKCQLKLDWPTRQRICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLNEQDNTHISTRIAGT 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi242g00006 830 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 28 263 - -
Gabi242g00006 830 SMART serkin_6 661 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi242g00006 830 Gene3D Transferase(Phosphotransferase) domain 1 737 830 - -
Gabi242g00006 830 Pfam Malectin domain 401 584 IPR021720 -
Gabi242g00006 830 Gene3D Ribonuclease Inhibitor 31 157 IPR032675 -
Gabi242g00006 830 Gene3D Ribonuclease Inhibitor 158 224 IPR032675 -
Gabi242g00006 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Gabi242g00006 830 SUPERFAMILY Protein kinase-like (PK-like) 646 830 IPR011009 -
Gabi242g00006 830 SUPERFAMILY L domain-like 81 357 - -
Gabi242g00006 830 Gene3D Phosphorylase Kinase; domain 1 629 736 - -
Gabi242g00006 830 Gene3D Ribonuclease Inhibitor 225 395 IPR032675 -
Gabi242g00006 830 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 399 589 - -
Gabi242g00006 830 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 630 736 - -
Gabi242g00006 830 Pfam Protein kinase domain 664 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi242g00006 830 ProSiteProfiles Protein kinase domain profile. 661 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi242g00006 830 FunFam Os07g0541700 protein 737 830 - -
Gabi242g00006 830 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 269 360 - -
Gabi242g00006 830 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 830 - -
Gabi242g00006 830 Gene3D - 397 588 - -
Gabi242g00006 830 Pfam Leucine rich repeat 276 336 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi242g00006 Gabi-Chr242 73667 86787 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi242g00006 21 830 Receptor kinase-like Gene Family AT1G53420 56.265 0.0 858
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi242g00006 Malectin 8.6e-44 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi242g00006 - - lang:109352857 1318.91