Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi242g00005 ATGAGTGCCTTCTTCCCTCGATTCCCCTTTCTTTTTCTCTTCCCTCTTTGCTTTGCATCATTTGCTTTTGGAGCCACTCTGCAAGAAGATGAAGTGCAAGCTCTGAAAGACATAGGTAACACAATTGGGAAGAAAAATTGGGACTTCAGTGTAGATCCATGTAGCGGAAAGAGTAACTGGAGGTCGCTTGCTCAATTGCAAGGATCAGAAAATGCTGTCACTTGTAATTGCTCTTTTGCCAATCACACTGTTTGCCATGTCGTCAGCATTGTTTTGAAAGCTCAAAATCTTTCGGGTAGTCTCCCCCCCGAGCTTGTGAGGTTGCCTTATCTCCAAGAAATTGACCTCACCCTCAACTACCTTAATGGTACAATCCCTAAACAATGGGCCACCTTAAATCTTGTCAACATTTCCTTTTATGGAAATCGTGTAACAGGTCCAATACCAAAGGAGCTTGGAAACATCACCACTCTCAAAAGTTTGGTATTGGAGTTCAATCAATTATCAGGAAATCTTCCTCCAGAACTTGGGAATCTTACCCACCTTGAAAGACTGCTTCTTACCTCCAATAATTTCACTGGAGAGTTACCTGCAACATTTTCTAGCCTTACTACATTGAAGCATGTTCGAATTGGCGACAATCAATTCTCTGGAGCACTACCCAATTTTATACAGAGCTGGATAAATCTTGAGATACTCGTGATCCAAGGGAGTGGTTTGAGTGGGCCATTTCCTTCTGGAATTTCAATTCTGCGAAACCTTACTGATTTGAGAATTACTGACTTGAATGGATCTGATTCACCTTTTCCACAACTTAATAATATGACAAATTTGGAAACACTAATATTGAGGAGTTGCAATATTATTGGAACCTTGCCTGAATATCTTGGAAACTTGACTAGTCTGCAAGTATTGGACCTCAGCTACAACAAATTAAGTGGACCAATTCCGAGCAGTTTTGATGGTCTACAGAACATGAATATGCTATTTTTAGCTGGGAATCTTCTCACAGGATCGCTGCCTCAGTGGATAGATAAACCAGACTTTGTTGATCTCTCTTATAACAACTTCAGCATCAGAAACATTGAGCAGCCGACTTGTCAACAGGGAAGCGTGAACTTGTTTGCATCCTCCTTGAAAGGAAACAGCTTAGGAAATGTTTCCTGTTTGTCAAACATTCAATGCCCTAAAACTTCGTACTCTCTTTATATAAATTGTGGTGGAAAGCTTGTAACTTCTTATGGAAATAAGACATACGATGATGACTCGGGTGAGACTGGACCAGCAAGATTTCGTCAAAGTGGAACAAACTGGGCACTTATCAATGCTGGTCATTTCTTTGATAGTGGTCGCTCAGACTACTATAAGTGGTCTAATACAACTAAGCTTGCGGTGGATAATGCTAATCTGTACATGGATGCCCGTGTTTCTCCTAATTCTTTGACTTACTATGGATTTTGCCTGGGAAATGGAAACTACACAGTAAATCTTCATTTTGCAGAAATAATGTTCACTGATGATAAAACATATAGCAGCCTTGGAAGACGTGTATTTGACATCTATGTTCAGAGAAAGTTGGTAGTTAAGGATTTCAATATTGCAAAAGAAGCAGGGGGTGTTGGTGAGGCAGTCATAAAAAATTTCACTGCTGTTGTGACTAGTAATGCTTTGGAGATCCGCTTATATTGGGCTGGGAAAGGGACAACTTCTATCCCATTTGGATCAGTTTATGGTCCACTTATATCAGCTATATCAGTTGATCCTGACTTTACACCACCATCGGAAAATGGTAATAGCATACCTGTAGGGGTTGTGGTTGCAATTGTGGTTTCTGGAGCAATTATTATCATCTTGGTAATTGGTATACTGTGGTGGAAGGGCTGTTTAGGACTGAAAAGATCAGTGGCCAGAGAGCTAAAGGATTTAGAATCAAAAACTGGCTTATTTACCTTACGACAAATCAAAGCAGCAACAAACAACTTCGATAAAGCCTTCAAGATTGGAGAAGGAGGATTTGGTCCCGTTTACAAGGGCATTTTGTCAGATGGCACAATAGTAGCTGTTAAGCAGCTTTCTTCTAAATCAAGGCAAGGGAATCGTGAATTCATAAATGAGATAGGCCTGATTTCTGCTTTGCAACACCCGTGTCTAGTTAAGCTTTATGGCTGTTGTATGGAGGAGGATCAATTGTTGCTGATATATGAATACATGGAAAACAATAGCCTTGCTCGTGCTTTATTTGGTAATTACATAAATGACGAGCCTGAGAAATGTCAATTGAAATTGGACTGGCCAACAAGGCAGAGGATTTGTGTTGGTATTGCTAAAGGCTTGGCATACCTTCATGAAGAGTCAAGACTGAAGATAGTTCATAGGGACATCAAGGCCACAAATGTTTTGCTGGATAAAGATCTCAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTCAATGAACAGGACAATACCCACATAAGCACCAGAATAGCTGGCACTTATGGGTACATGGCTCCTGAGTATGCAATGCATGGTTATTTGACGGACAAAGCAGATGTTTATAGTTTCGGAATTGTAGCATTGGAAATTGTTAGTGGGACAAGCAACACCATTAGCCAGCCTAAAGAAGAATGCTTCTCTCTACTTGATTGGGTGCATATCTTGAAAGAAAGAGGTAATCTTATGGAGCTTGTGGATAAGAGGTTGGGTGAAGACTTCAATAAAGAGGAGGTAATGGTGATGATCGATGTGGCTCTTTTATGCACTAATGTTTCTCCAACTCTCAGGCCCACCATGTCTTCAGTGGTAAGCATGCTTGAAGGTAGAACCGTTGTTCAAGAGGTGGTGTCAGACACAAGAGAGGTATTGGATGATAAGAAATATGAGATGATGCGAGAGTATTATCACCCCAGAGGAGAAAATAGCACAACTGAGACTCAGAACCAGAGTGTCCCAACAGATGAAACTTCTGTTATTATATCTGATACAGATTCTTCTTGCGAGAAAATCAAAAGTTAG 3015 0.4053 MSAFFPRFPFLFLFPLCFASFAFGATLQEDEVQALKDIGNTIGKKNWDFSVDPCSGKSNWRSLAQLQGSENAVTCNCSFANHTVCHVVSIVLKAQNLSGSLPPELVRLPYLQEIDLTLNYLNGTIPKQWATLNLVNISFYGNRVTGPIPKELGNITTLKSLVLEFNQLSGNLPPELGNLTHLERLLLTSNNFTGELPATFSSLTTLKHVRIGDNQFSGALPNFIQSWINLEILVIQGSGLSGPFPSGISILRNLTDLRITDLNGSDSPFPQLNNMTNLETLILRSCNIIGTLPEYLGNLTSLQVLDLSYNKLSGPIPSSFDGLQNMNMLFLAGNLLTGSLPQWIDKPDFVDLSYNNFSIRNIEQPTCQQGSVNLFASSLKGNSLGNVSCLSNIQCPKTSYSLYINCGGKLVTSYGNKTYDDDSGETGPARFRQSGTNWALINAGHFFDSGRSDYYKWSNTTKLAVDNANLYMDARVSPNSLTYYGFCLGNGNYTVNLHFAEIMFTDDKTYSSLGRRVFDIYVQRKLVVKDFNIAKEAGGVGEAVIKNFTAVVTSNALEIRLYWAGKGTTSIPFGSVYGPLISAISVDPDFTPPSENGNSIPVGVVVAIVVSGAIIIILVIGILWWKGCLGLKRSVARELKDLESKTGLFTLRQIKAATNNFDKAFKIGEGGFGPVYKGILSDGTIVAVKQLSSKSRQGNREFINEIGLISALQHPCLVKLYGCCMEEDQLLLIYEYMENNSLARALFGNYINDEPEKCQLKLDWPTRQRICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLNEQDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGTSNTISQPKEECFSLLDWVHILKERGNLMELVDKRLGEDFNKEEVMVMIDVALLCTNVSPTLRPTMSSVVSMLEGRTVVQEVVSDTREVLDDKKYEMMREYYHPRGENSTTETQNQSVPTDETSVIISDTDSSCEKIKS 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi242g00005 1004 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 630 736 - -
Gabi242g00005 1004 FunFam Putative LRR receptor-like serine/threonine-protein kinase 737 950 - -
Gabi242g00005 1004 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 968 - -
Gabi242g00005 1004 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 399 589 - -
Gabi242g00005 1004 Gene3D Ribonuclease Inhibitor 225 371 IPR032675 -
Gabi242g00005 1004 Pfam Leucine rich repeat 276 336 IPR001611 GO:0005515
Gabi242g00005 1004 ProSiteProfiles Protein kinase domain profile. 661 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi242g00005 1004 MobiDBLite consensus disorder prediction 967 1004 - -
Gabi242g00005 1004 Gene3D Ribonuclease Inhibitor 157 224 IPR032675 -
Gabi242g00005 1004 Gene3D Ribonuclease Inhibitor 31 156 IPR032675 -
Gabi242g00005 1004 Pfam Malectin domain 401 584 IPR021720 -
Gabi242g00005 1004 Gene3D Transferase(Phosphotransferase) domain 1 737 961 - -
Gabi242g00005 1004 CDD STKc_IRAK 667 940 - -
Gabi242g00005 1004 SMART serkin_6 661 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi242g00005 1004 MobiDBLite consensus disorder prediction 972 997 - -
Gabi242g00005 1004 SUPERFAMILY L domain-like 81 357 - -
Gabi242g00005 1004 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 28 263 - -
Gabi242g00005 1004 Gene3D Phosphorylase Kinase; domain 1 629 736 - -
Gabi242g00005 1004 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 269 360 - -
Gabi242g00005 1004 Gene3D - 397 588 - -
Gabi242g00005 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Gabi242g00005 1004 SUPERFAMILY Protein kinase-like (PK-like) 643 945 IPR011009 -
Gabi242g00005 1004 Pfam Protein kinase domain 664 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi242g00005 Gabi-Chr242 70746 86787 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi242g00005 21 998 Receptor kinase-like Gene Family AT1G53420 54.822 0.0 1024
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi242g00005 Pkinase 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi242g00005 - - gmx:100798947 1499.95