Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2424g00025 ATGCTTCCTATGAGCTGCATTCTTTTAATGTGCCTCTTGAGTTCTTTCTCACCCCCAATCCAAGCTTTATTTAACCTCACCTTGCCCCACCAACATTCTTACCCTGAAGCTGTGGTTCAAGAAGTTCAACGGAAAATCAATGTGTCACTCTCGAGAAGACAACTCCTCTCAAAGGACCAAGCTTCGTGTCTAACGGGCAACCCGGTTGACGATTGCTGGCGGTGCGACCCGAACTGGGCCGTGAACCGCCAGAAGCTGGCGGATTGCGGCATCGGGTTCGGGCGCAACGCCATGGGCGGAAAGGGCGGTCAGATCTACATCGTCACCGACTCCTCCGACAACGATCCGGTGAACCCCGTCCCCGGCACCCTCCGTCACGCCGTAATCCAAGACGTTCCCCTGTGGATCGTGTTCGCCGCCGACATGACCATAACCCTAAGACACGAGCTGATTTTCAACAGTTTCAAAACCGTCGACGGCCGCGGCGTCAATGTTCAGGTCACCGGCCACGGTTGCATAACGCTCCAGTATGTGTCGAATGTCATCATCCACAACATCCACGTGCACCATTGCAAGCCCTCGGGTAACACTAATATAAGGGCGAGTCCAACGCATGTAGGGTGGAGGGGCATATCGGACGGTGACGGGATATCAATCTTCAGCGCCCGGAACATCTGGATCGACCATTGCTCGCTGTCTTACTGCACGGACGGCTTGATCGATGCCATAATGGGGTCCACTGGGATAACAATATCTAACAACCATTTCGCACACCACGATGAGGTGATGCTGTTGGGCCACAACGATAACTACTTGCCCGATAAGGGTATGCAGGTTACGATTGCCTTCAATCACTTCGGTGAAGGGCTGGTGCAGCGTATGCCGCGGTGCAGACACGGTTATATACACGTCGTTAACAACGATTTCACTCAGTGGGAGATGTATGCTATCGGCGGCAGCGCTAGCCCCACCATTAACAGCCAGGGTAACCGTTACACTGCTCCCTCCGATCCTAATTCCAAAGAGGTGACGAAGCGCGTGGATACGGAGGAGAATGAGTGGAGTGATTGGAATTGGAGGACGGAGGGGGATATAATGGTAAATGGAGCATTCTTCGTGCCTTCTGGTGCAGGGCTCGCTGCTCAGTATGCACAGGCCTCAAGTGTGCAACCCAAATCCGCCGAGCAAATTGACCTGCTCACCATGTACTCCGGAGTCTTCGGCGATCCCAGGGATAATGGGGATTTATATCCCGGTTTCAACGGAGGTGGGACCGTGACCGGAGCCTCCAGCAAGGGCCACAATGAGGGGTCCAGCGGCGACGATGGGGACTTCTTCGGGATGATATTCAGAGGTGGTAGCAGCCAAGCAGCACCACCATTACCCTCCTCATCCATTGTATTTGTTTCAGCTTTTTTGTCTCTTTTAATTATTTTCATTTTGGACACTATCACCAACCATGCTTTTCTATTATCATTATTATGA 1485 0.5259 MLPMSCILLMCLLSSFSPPIQALFNLTLPHQHSYPEAVVQEVQRKINVSLSRRQLLSKDQASCLTGNPVDDCWRCDPNWAVNRQKLADCGIGFGRNAMGGKGGQIYIVTDSSDNDPVNPVPGTLRHAVIQDVPLWIVFAADMTITLRHELIFNSFKTVDGRGVNVQVTGHGCITLQYVSNVIIHNIHVHHCKPSGNTNIRASPTHVGWRGISDGDGISIFSARNIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHNDNYLPDKGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTQWEMYAIGGSASPTINSQGNRYTAPSDPNSKEVTKRVDTEENEWSDWNWRTEGDIMVNGAFFVPSGAGLAAQYAQASSVQPKSAEQIDLLTMYSGVFGDPRDNGDLYPGFNGGGTVTGASSKGHNEGSSGDDGDFFGMIFRGGSSQAAPPLPSSSIVFVSAFLSLLIIFILDTITNHAFLLSLL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2424g00025 494 PANTHER PECTATE LYASE 18-RELATED 31 407 IPR045032 GO:0030570
Gabi2424g00025 494 FunFam Pectate lyase 66 408 - -
Gabi2424g00025 494 Pfam Pectate lyase 149 330 IPR002022 -
Gabi2424g00025 494 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Gabi2424g00025 494 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Gabi2424g00025 494 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Gabi2424g00025 494 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Gabi2424g00025 494 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Gabi2424g00025 494 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Gabi2424g00025 494 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Gabi2424g00025 494 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Gabi2424g00025 494 SMART amb_all 141 338 IPR002022 -
Gabi2424g00025 494 SUPERFAMILY Pectin lyase-like 67 397 IPR011050 -
Gabi2424g00025 494 Gene3D - 66 408 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2424g00025 Gabi-Chr2424 235133 240891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2424g00025 1 491 Polysaccharide Lyase AT3G53190 61.078 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2424g00025 K01728 - gmx:100808438 848.195