Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2424g00020 | ATGTTTCCGGAGACAAGCACGACGCGGTGGCCGACTCAGCCAGCCGAGCCGAGTGAGTGGACTCGTTACCAGGATAAGCTCTTCGAGCGAGCTCTATTGATGGTGCCGGAGGATCAGCCTGACCGGTGGGAGAAGATCGCCGAGCAGGTACCGGGAAAGTCGGCGGCGGAGGTGAGGGACCACTATGATGCCTTGGTTCACGACGTGTTCGAGATCGACTCGGGTCGGGTCGAGGTGCCGAACTACACGGATGACTTTGCTGGTGGATTGTCCTCATGGGACTCTGCTAATCAAATATCTTTCGGGTCCAAGTCTAAGCATGGCGACAACGAGAGGAAGAAAGGGACTCCATGGACTGAAGAGGAACACAGGCTGTTTCTCATTGGGCTCAGCAAATTTGGCAAGGGAGATTGGAGAAGCATTTCAAGAAATGTTGTTGTGACAAGAACACCAACTCAAGTAGCTAGCCATGCCCAGAAATACTTCCTTCGCCAGAATTCGGGGAAGAAAGAGAGGAAAAGATCGAGCATCCATGACATAACCACAGTGGACAGTAACTCAGTGCCTGTGCCCATTGATCAGAATTGGGTTCCTCCTCCTACTAGTTCAATGCAGCCGTCACAAGAAATGCAGCAGTACCCATCAAACAATTTGCAAGATCAAATGGGTAGATTTGGTTATTCAAACTATGGCTTTGAGATGTAA | 705 | 0.5064 | MFPETSTTRWPTQPAEPSEWTRYQDKLFERALLMVPEDQPDRWEKIAEQVPGKSAAEVRDHYDALVHDVFEIDSGRVEVPNYTDDFAGGLSSWDSANQISFGSKSKHGDNERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSGKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPTSSMQPSQEMQQYPSNNLQDQMGRFGYSNYGFEM | 234 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2424g00020 | 234 | CDD | SANT | 117 | 162 | IPR001005 | - | |
| Gabi2424g00020 | 234 | Gene3D | - | 116 | 167 | - | - | |
| Gabi2424g00020 | 234 | FunFam | Transcription factor SRM1 | 12 | 79 | - | - | |
| Gabi2424g00020 | 234 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 110 | 166 | IPR017930 | - | |
| Gabi2424g00020 | 234 | ProSiteProfiles | Myb-like domain profile. | 110 | 162 | IPR001005 | - | |
| Gabi2424g00020 | 234 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 113 | 165 | IPR006447 | GO:0003677 | |
| Gabi2424g00020 | 234 | SUPERFAMILY | Homeodomain-like | 18 | 74 | IPR009057 | - | |
| Gabi2424g00020 | 234 | CDD | SANT | 19 | 62 | IPR001005 | - | |
| Gabi2424g00020 | 234 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 15 | 223 | IPR043363 | - | |
| Gabi2424g00020 | 234 | FunFam | transcription factor MYB1R1 | 116 | 167 | - | - | |
| Gabi2424g00020 | 234 | SUPERFAMILY | Homeodomain-like | 112 | 166 | IPR009057 | - | |
| Gabi2424g00020 | 234 | Pfam | Myb-like DNA-binding domain | 117 | 162 | IPR001005 | - | |
| Gabi2424g00020 | 234 | Pfam | Myb-like DNA-binding domain | 18 | 62 | IPR001005 | - | |
| Gabi2424g00020 | 234 | ProSiteProfiles | Myb-like domain profile. | 12 | 66 | IPR001005 | - | |
| Gabi2424g00020 | 234 | SMART | sant | 16 | 68 | IPR001005 | - | |
| Gabi2424g00020 | 234 | SMART | sant | 114 | 164 | IPR001005 | - | |
| Gabi2424g00020 | 234 | Gene3D | - | 13 | 79 | - | - | |
| Gabi2424g00020 | 234 | ProSiteProfiles | SANT domain profile. | 113 | 166 | IPR017884 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2424g00020 | Gabi-Chr2424 | 152175 | 154160 | Dispersed/Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Gabi2424g00020 | Myb_DNA-binding | 4.2e-11 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi2424g00020 | - | - | gmx:547481 | 389.423 |