Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2424g00009 ATGGGATCTGAAGCTCTTGTTCCAAAATGGGGATCTAAACCTTGCATCATGGGAATCGACGAAGCTGGAAGAGGCCCTGTTCTAGGGCCCATGGTCTATGGTTGTTTGTACTGTGCTCGCTCCTACCAAAAGACCCTATCTACTTTGAGTTTTGCAGATTCCAAGACACTAAAAGAAGAGAAGAGGGAAGAATTATTTGAAACTTTAAAGACCAATGATTCTATTGGATGGGCTGTTGATGTCATTGACCCAAGGGAACTCTCCGCTAAAATGCTTAAGAAGAATAAGATAAACTTGAATGAGATATCTCATAACTCTGCCATGGGTCTCATCGATAGGGTACTAAAAATGGGAGTGCTTCTAACCGAGGTTTATATAGATACAGTTGGAGATCCAGAGAAATATGAAATGAAGCTGTCTAGAAGTTTCTCATCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTCAGTGGTGCAAGCATAGTTGCAAAGGTCACAAGAGACCAAGCTTTAAGAGAATGGGTGCTCGATGAGACAGCTGAAAACATGCACAGGAACTTTGGCTCTGGATATCCAGGAGATCCCCAAACCAAGTCTTGGCTAGAACATCACAAACATTCTATCTTTGGATTTCCAACATTGGTCCGATTTAGTTGGGGAACCTGCACTACTTATTTTAAAGATATTGCGGAAGTCTTGTGGGAGTCTGACAAGGATGAAGATGGCGGTAGCATTAATAATAGTGGCAAGCGGCAATTGAAATTAAGTAATGTGGGTTTCACCTCATCCAAGAGGAGAAGTGAAGAAATAGAATCAAGTGGTAAAGGACGTTGTAGGTTTTTTCAGGCTCGGAAACTTGAGCACCTCAATTATTTCTAA 894 0.4128 MGSEALVPKWGSKPCIMGIDEAGRGPVLGPMVYGCLYCARSYQKTLSTLSFADSKTLKEEKREELFETLKTNDSIGWAVDVIDPRELSAKMLKKNKINLNEISHNSAMGLIDRVLKMGVLLTEVYIDTVGDPEKYEMKLSRSFSSIKFVVAKKADSLYPVVSGASIVAKVTRDQALREWVLDETAENMHRNFGSGYPGDPQTKSWLEHHKHSIFGFPTLVRFSWGTCTTYFKDIAEVLWESDKDEDGGSINNSGKRQLKLSNVGFTSSKRRSEEIESSGKGRCRFFQARKLEHLNYF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2424g00009 297 CDD RNase_HII_eukaryota_like 17 233 - -
Gabi2424g00009 297 Gene3D Ribonuclease hii. Domain 2 187 236 IPR023160 GO:0004523
Gabi2424g00009 297 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
Gabi2424g00009 297 Gene3D - 3 186 IPR036397 GO:0003676
Gabi2424g00009 297 FunFam Ribonuclease 188 235 - -
Gabi2424g00009 297 SUPERFAMILY Ribonuclease H-like 15 232 IPR012337 -
Gabi2424g00009 297 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
Gabi2424g00009 297 FunFam Ribonuclease 2 186 - -
Gabi2424g00009 297 PANTHER RIBONUCLEASE H2 SUBUNIT A 6 284 IPR001352 GO:0003723|GO:0004523
Gabi2424g00009 297 NCBIfam ribonuclease HII 16 229 IPR004649 GO:0004523|GO:0016070
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2424g00009 Gabi-Chr2424 77254 81602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2424g00009 1 297 Core DNA Replication Machinery Family AT2G25100 66.667 1.03e-149 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2424g00009 K10743 - gmx:100779875 520.39