Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2424g00008 ATGGGATCTGAAGCTCTTGTTCCAAAATGGGGATCTAAACCTTGCATCATGGGAATCGACGAAGCTGGAAGAGGCCCTGTTCTAGGGCCCATGGTCTATGGTTGTTTGTACTGTGCTCGCTCCTACCAAAAGACCCTATCTACTTTGAGTTTTGCAGATTCCAAGACACTAAAAGAAGAGAAGAGGGAAGAATTATTTGAAACTTTAAAGACCAATGATTCTATTGGATGGGCTGTTGATGTCATTGACCCAAGGGAACTCTCCGCTAAAATGCTTAAGAAGGTACTAAAAATGGGAGTGCTTCTAACCGAGGTTTATATAGATACAGTTGGAGATCCAGAGAAATATGAAATGAAGCTGTCTAGAAGTTTCTCATCTATCAAATTTGTGGTTGCAAAGAAGGCTGATAGTCTTTATCCTGTTGTCAGTGGTGCAAGCATAGTTGCAAAGGTCACAAGAGACCAAGCTTTAAGAGAATGGGTGCTCGATGAGACAGCTGAAAACATGCACAGGAACTTTGGCTCTGGATATCCAGGAGATCCCCAAACCAAGTCTTGGCTAGAACATCACAAACATTCTATCTTTGGATTTCCAACATTGGTCCGATTTAGTTGGGGAACCTGCACTACTTATTTTAAAGATATTGCGGAAGTCTTGTGGGAGTCTGACAAGGATGAAGATGGCGGTAGCATTAATAATAGTGGCAAGCGGCAATTGAAATTAAGTAATGTGGGTTTCACCTCATCCAAGAGGAGAAGTGAAGAAATAGAATCAAGTGGTAAAGGACGTTGTAGGTTTTTTCAGGCTCGGAAACTTGAGCACCTCAATTATTTCTAA 837 0.4158 MGSEALVPKWGSKPCIMGIDEAGRGPVLGPMVYGCLYCARSYQKTLSTLSFADSKTLKEEKREELFETLKTNDSIGWAVDVIDPRELSAKMLKKVLKMGVLLTEVYIDTVGDPEKYEMKLSRSFSSIKFVVAKKADSLYPVVSGASIVAKVTRDQALREWVLDETAENMHRNFGSGYPGDPQTKSWLEHHKHSIFGFPTLVRFSWGTCTTYFKDIAEVLWESDKDEDGGSINNSGKRQLKLSNVGFTSSKRRSEEIESSGKGRCRFFQARKLEHLNYF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2424g00008 278 NCBIfam ribonuclease HII 16 210 IPR004649 GO:0004523|GO:0016070
Gabi2424g00008 278 SUPERFAMILY Ribonuclease H-like 15 213 IPR012337 -
Gabi2424g00008 278 PANTHER RIBONUCLEASE H2 SUBUNIT A 6 265 IPR001352 GO:0003723|GO:0004523
Gabi2424g00008 278 FunFam Ribonuclease 169 216 - -
Gabi2424g00008 278 Gene3D Ribonuclease hii. Domain 2 168 217 IPR023160 GO:0004523
Gabi2424g00008 278 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 217 IPR024567 GO:0004523
Gabi2424g00008 278 CDD RNase_HII_eukaryota_like 17 214 - -
Gabi2424g00008 278 Gene3D - 3 167 IPR036397 GO:0003676
Gabi2424g00008 278 Pfam Ribonuclease HII 17 208 IPR024567 GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2424g00008 Gabi-Chr2424 77254 81602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2424g00008 1 278 Core DNA Replication Machinery Family AT2G25100 71.223 5.84e-154 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2424g00008 K10743 - gmx:100779875 465.692