Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2421g00002 ATGCAAAAACGAAGAGCTGGAAGAAAGAAGTTCCACGAGACTCGTCATCCAATATACAAAGGGGTGAGGCAGAGGAATGGGAAGTGGGTGTGTGAGCTACGACAACCTCAGAACAAAACTCGAGTATGGCTTGGAACTTTTGCTCACCCTGACATGGCAGCTATAGCATACGATGTTGCTGCTTTGGCTTTCAAAGGTGACAATGCTTCTTTAAATTTTCCAAACGAAGCTACCTCGTTGCCACGTCTTAATTCACGAACGTGTTCCGTTAGAGCCATTCAGTTTGCAGCAATGCAAGCAGCTGAAAAGCACTTTTCAGCCAATAATGAGATTGGTACGAATATTAATGGTTCTGAGGTGGGTTTAGAGGGAAATTCTGGAAGCTTCTTTTGGGATGAAGAGGAGGTGTTTAACTTGCCAGGGTTGATGAACAGCATGGCTGAAGGGTTGATTATAACGCCACCGGCTTTGGAGAGAGGGTTCAATTGGGTTGAAGGGGAAACTACCGTGGACTTGTCTCTCTGGGGTGAATGA 534 0.4569 MQKRRAGRKKFHETRHPIYKGVRQRNGKWVCELRQPQNKTRVWLGTFAHPDMAAIAYDVAALAFKGDNASLNFPNEATSLPRLNSRTCSVRAIQFAAMQAAEKHFSANNEIGTNINGSEVGLEGNSGSFFWDEEEVFNLPGLMNSMAEGLIITPPALERGFNWVEGETTVDLSLWGE 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2421g00002 177 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Gabi2421g00002 177 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Gabi2421g00002 177 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 2 175 IPR045277 GO:0003700
Gabi2421g00002 177 Gene3D AP2/ERF domain 18 75 IPR036955 GO:0003700|GO:0006355
Gabi2421g00002 177 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677
Gabi2421g00002 177 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Gabi2421g00002 177 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
Gabi2421g00002 177 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Gabi2421g00002 177 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2421g00002 Gabi-Chr2421 77795 78328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2421g00002 3 176 AP2-EREBP Transcription Factor Family AT4G25470 44.865 1.47e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2421g00002 AP2 3.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2421g00002 - - gmx:100778541 285.034