Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2421g00001 ATGCAATCTGGTTCTCAATCTAAATGCACCAGTTCTGCAACAGCAAGCAGTAGCAGTACTAGCAGCAAAGTCTCTGCAGAAACTGGTCGTCACCCAGTGTACCGTGGAGTGAGGCGTAGGAGTAGTGGAAAATGGGTGTCTGAAATTCGTGAGCCAAGGAAGCCTGATAGGATTTGGTTAGGGACATTCCCTACACCAGAAATGGCTGCTATTGCATATGATGTGGCTGCAATTGCTCTTAAGGGTAAGGATGCTGAGTTGAACTTCCCTGACTCAGCTTCTTCATTGCCTGTCCCTGCTTCTTTGTCTGCTAGTGATATTAAGGTGGCTGCAGCTAGTGCTGCTTCTGCTGCTGGAGCAGCAAAGGATGCTTTATCTGGTATTCAAGGAAGCCAAGAAAGAAAAGTTTCAGGGGAACAAGAACAACAGGAAGGGGTTAACCAGTTTGTGGATGAGGATTTGATCTTTGATATGCCCAATGTTCTTGTCAATATGGCTGAAGGAATGCTGCTTAGCCCTCCTCCTATTGACATTGGTGTGGAGGCTTCTTCCCCTGAAAACATGGACCTAGAGCCAAGCCTGTGGGATTTCCCTTAA 597 0.469 MQSGSQSKCTSSATASSSSTSSKVSAETGRHPVYRGVRRRSSGKWVSEIREPRKPDRIWLGTFPTPEMAAIAYDVAAIALKGKDAELNFPDSASSLPVPASLSASDIKVAAASAASAAGAAKDALSGIQGSQERKVSGEQEQQEGVNQFVDEDLIFDMPNVLVNMAEGMLLSPPPIDIGVEASSPENMDLEPSLWDFP 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2421g00001 198 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Gabi2421g00001 198 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Gabi2421g00001 198 PRINTS Ethylene responsive element binding protein signature 72 92 IPR001471 GO:0003700|GO:0006355
Gabi2421g00001 198 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Gabi2421g00001 198 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Gabi2421g00001 198 MobiDBLite consensus disorder prediction 1 27 - -
Gabi2421g00001 198 MobiDBLite consensus disorder prediction 1 48 - -
Gabi2421g00001 198 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Gabi2421g00001 198 SUPERFAMILY DNA-binding domain 33 92 IPR016177 GO:0003677
Gabi2421g00001 198 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Gabi2421g00001 198 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 21 195 IPR045277 GO:0003700
Gabi2421g00001 198 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2421g00001 Gabi-Chr2421 11544 12140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2421g00001 29 198 AP2-EREBP Transcription Factor Family AT2G36450 60.335 4.00e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2421g00001 AP2 8.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2421g00001 - - pvu:PHAVU_007G222600g 232.646