Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2420g00010 ATGATCTCAAGATGTTACTATGAAGATAATATCATTTTCTACAAACATCTCCATTCACAGCCATTGTTAAGTGAACGGAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCAAGGTCCGGCTGGTCCAAGATCTTTGTGCAATGCCTGCGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAAGGACTGCCTTTGAACAAAATGAACTGGCAAAATGGTATTATTATATACTTCTTCGGTTGGTTGATGTGGAGGAAAATTTTCTTGTTCCGAAGGCGTATCAATACACAACACTTACAAGTGTGATGCTGCTTGACTGCTGGTCAATTCCATCCGTCAGCATGGAAAATGATATAATTAATTATATTGACTTCAATTATGATTGTGTGTCAAATGAAATGGAATACGATGGACTAGGAAACGATATACTTGATGAAATGGAAGATGACCTATTGAATGACTTGCCTATCAATATGTCAAGTGTCATTCCATTATCACCGACAGAGAATATTAATGGTTCCATTGAGGTAGGAATGGAATTTCTCGAATGGAAGGATATAGTATACTTATAG 606 0.3861 MISRCYYEDNIIFYKHLHSQPLLSERRCQHCGISEKSTPAMRQGPAGPRSLCNACGLMWANKGTLRDLSKAGRTAFEQNELAKWYYYILLRLVDVEENFLVPKAYQYTTLTSVMLLDCWSIPSVSMENDIINYIDFNYDCVSNEMEYDGLGNDILDEMEDDLLNDLPINMSSVIPLSPTENINGSIEVGMEFLEWKDIVYL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2420g00010 201 CDD ZnF_GATA 27 70 IPR000679 GO:0006355|GO:0043565
Gabi2420g00010 201 Pfam GATA zinc finger 28 64 IPR000679 GO:0006355|GO:0043565
Gabi2420g00010 201 SMART GATA_3 22 75 IPR000679 GO:0006355|GO:0043565
Gabi2420g00010 201 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 25 74 - -
Gabi2420g00010 201 ProSitePatterns GATA-type zinc finger domain. 28 55 IPR000679 GO:0006355|GO:0043565
Gabi2420g00010 201 Gene3D - 23 80 IPR013088 GO:0006355|GO:0008270
Gabi2420g00010 201 Pfam Solute carrier family 35 82 125 IPR009262 GO:0016020|GO:0022857|GO:0055085
Gabi2420g00010 201 PANTHER GATA TRANSCRIPTION FACTOR 28 24 81 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2420g00010 Gabi-Chr2420 214989 220628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2420g00010 28 71 Tify Gene Family AT1G51600 84.091 1.36e-22 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi2420g00010 SLC35F 9.3e-18 CL0184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2420g00010 - - gmx:100785549 121.324