Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2420g00009 ATGTTTTCAATTATAAACGAGAGTGGTCCCTACACGCTCAAGTATAAAGGAGCTTACAAGTATGTTTCGGAGCTCTCGCGCAAGAAGCAATCTGATGTGATGAGATTCTTGCAGCGTGTGAGGTGTTGGGAGTATCGTCAACAACCTTCTATTGTTCATTTGACAAGGCCTACTCGCCCACACAAGGCTCGCCGCTTGGGTTATAAGGCAAAGCAGAATGGCCCTCCATGTCTTGATTATGAAAGAGACGAGATTTTCAAAGGCTTGTGTTGTTCACTCGCACTTGTTACCACCAACTTTGCTTTGGGTTGGACAGTTTATAGGGTATCTTTGTGGTCAAGGCATTGGATTCGACATCTTGGCCCTGGAATTGATTCGTTTTACCGGAAGAATAGTTTTTGGTATCATATTTATTCTTGTGATATATGGGGATTTCCTCTGACAATGTAA 450 0.4289 MFSIINESGPYTLKYKGAYKYVSELSRKKQSDVMRFLQRVRCWEYRQQPSIVHLTRPTRPHKARRLGYKAKQNGPPCLDYERDEIFKGLCCSLALVTTNFALGWTVYRVSLWSRHWIRHLGPGIDSFYRKNSFWYHIYSCDIWGFPLTM 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2420g00009 149 Pfam Ribosomal L15 17 72 IPR000439 GO:0003735|GO:0005840|GO:0006412
Gabi2420g00009 149 SMART Ribosomal_L15e_2 17 129 IPR000439 GO:0003735|GO:0005840|GO:0006412
Gabi2420g00009 149 Gene3D Ribosomal protein l15e 16 129 IPR024794 GO:0003735|GO:0005840
Gabi2420g00009 149 PANTHER RIBOSOMAL PROTEIN L15 17 109 IPR000439 GO:0003735|GO:0005840|GO:0006412
Gabi2420g00009 149 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 16 72 IPR012678 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2420g00009 Gabi-Chr2420 212511 214932 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2420g00009 17 72 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 92.857 1.15e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2420g00009 K02877 - thj:104806672 110.153