Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2420g00008 ATGGAAGCCACCTGCAATGATGCCATGGGTAACTCTACAGTTGCACATTCTTCTCCGGTCATGTCGTTTAACGGGAAACGACTTGTCGTGGATGAAATGGATTTCTTTGCAGAGAAGAAAAGTAGTGCAGTAGTTGATCATGATCAAGTGATGCATGAAATGGAGCTTCATCATGTTGATACTAATTTAGATCTCCAATCAAAGAATTCAACTGTGGAAGATGGGGCATTGGAGATCAGGGGAGATAAGAGAAATAAGTATGTAGCTTTGCTAGCTGAATTGCACCACATGAATGCTGAAAATCAACGCTTGAGAGAGCTGGTTGATCAGGTGAACAATGAATACAATGCCCTACACAAGCATCTTATGAAGCAGATGCAGAAACAGCATAAAAATGAGATTCATGGAGCAATAGATAAGGAGGTAAAGAAAGATGATATGATTCCAAGGCCATTTTTGGACATTGGTTTGGCTAAAAAGGATGAGCCTTCACTGCAAGAAAGAAAAAACATGATTGACTTGATGGAGTGCAAGGCTCAGAAGATTTGCACTAGTAGAGATAATATTATTCAGTTTGACACAGACAAGCATGATTCTGAAGGCAGGGATAGTACAAAACCTAGAAGGGATCATGAGAGTCAAGCTGAACAAGCATTTCCAGGGTGGCTCTCTGATGAAGGCAAGAGATTGAGTTCTTTTAGGGATGTTGATCAAGCATCAGAAACCATGTCAATGATCAAGAAAGCTCGTGTATCCGTTCGAGCAAAATCAGAATCTTCTATGATTTCAGATGGATGTCAATGGCGAAAGTATGGGCAGAAGATGGCTAAAGGGAATCCATGTCCGCGAGCTTATTATCGTTGCACAATGGGAACTGGTTGTCCAGTTCGGAAGCAAGTACAAAGGTGTGCTGAAGATCGAAGTGTGTTAATCACAACATATGAAGGGCAGCATAATCATCCACTACCTCCCACTGCTAAGGCAATGGCATCCACAACATCTGCAGCTGCATCAATGCTTCTTTCAGGATCAATGCCAAGTGCAGATGGCTTAATGAATCCAAACATATTAGAAAGTGCAGCACTCCCTTGCTCACAGAACATGGCAACACTCTCAGCTTCAGCTCCATTTCCAACAATCACATTGGATCTTACTCAAAGTGCTACTAGTTCCTCACAACCACAAGGCCAACTTAGCCTCCTTCCCCCACTTTTGGCTCAAAATATGTCAGTTCCAAACATTTTTGGACATGCCCTTTTTGACCAAACTAAGCTTTCTAGCTTACATGGATCTCAGGGAATGGAAACAACTCAATTTGCAGATTCAGTAAATGCGGCAACAGCTGCTATCACTGCAGACCCAAAATTCACTGCAGCTCTTGTGGCTGCCATTACTTCTATCATTGGAACTTCACATCCTAACAATAATGGTACAAGTGAAGACCAGCAAAGCAATAAAACATAA 1464 0.4187 MEATCNDAMGNSTVAHSSPVMSFNGKRLVVDEMDFFAEKKSSAVVDHDQVMHEMELHHVDTNLDLQSKNSTVEDGALEIRGDKRNKYVALLAELHHMNAENQRLRELVDQVNNEYNALHKHLMKQMQKQHKNEIHGAIDKEVKKDDMIPRPFLDIGLAKKDEPSLQERKNMIDLMECKAQKICTSRDNIIQFDTDKHDSEGRDSTKPRRDHESQAEQAFPGWLSDEGKRLSSFRDVDQASETMSMIKKARVSVRAKSESSMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAKAMASTTSAAASMLLSGSMPSADGLMNPNILESAALPCSQNMATLSASAPFPTITLDLTQSATSSSQPQGQLSLLPPLLAQNMSVPNIFGHALFDQTKLSSLHGSQGMETTQFADSVNAATAAITADPKFTAALVAAITSIIGTSHPNNNGTSEDQQSNKT 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2420g00008 487 MobiDBLite consensus disorder prediction 193 215 - -
Gabi2420g00008 487 Pfam WRKY DNA -binding domain 264 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2420g00008 487 Gene3D WRKY domain 247 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi2420g00008 487 SMART WRKY_cls 262 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2420g00008 487 SUPERFAMILY WRKY DNA-binding domain 256 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi2420g00008 487 MobiDBLite consensus disorder prediction 193 218 - -
Gabi2420g00008 487 Coils Coil 87 121 - -
Gabi2420g00008 487 FunFam probable WRKY transcription factor 31 247 324 - -
Gabi2420g00008 487 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 72 480 IPR044810 GO:0003700
Gabi2420g00008 487 ProSiteProfiles WRKY domain profile. 257 323 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2420g00008 Gabi-Chr2420 191825 195126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2420g00008 27 482 WRKY Transcription Factor Family AT1G62300 44.200 3.40e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi2420g00008 WRKY 3.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2420g00008 - - gmx:100779533 520.776