Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2420g00006 ATGGAGAAAGTTGAATTGGGTATCTCAGAACCCTCTCAATTCCCTCCTTACCGTCGATCTCATTTACGCAGCCAAACTTACCACACTCTTGTTCGCATCATCTCTCACCTTTCTGCTTCCACCACTCACTCCCTCAATGTTCCTGATAATGGCAGCGGTAGAATGGGGCAAGAAATTCAGGAAAAGGAGCCTGAATGCTCTGAATTTGTTAGTTCTGGTTTTATGGATCCCAAGGATCCTGTGCCCAAGAAGGAGGAAATACTGGAGGTCCATGAGACCATTGATGGGGTTGGAGACAAGGTCATGGATTTTAGTGCCAATATGATTGTTCTAGATGATCTAGAACTTATGATGGGATTAGAGGAAACGTCTACACAAGCAGATGGCTTTAATATGGAGCAGAGGCTAATGGATGAGTTGGAGCTGGTTGTGAAAGGAACTGAAGATCTTGTTTGTGATAGTGGTTTAATCCCCTTGAACTCAGGATTAGATGATAAACAGAATGGCGGCAGTGAAGTTGAGTTGATGGATTACCAAGTACAGCATTCTGATGTGAACACATCTGAAAATGCAAGTAAGTTGCAAGTACGAGGAGAGCTTAATCAACTTGCCTCGCAAGGCTTTCATCCGTCTTTAATGTTTAATGTGGACACATCAACAATGGGACAAGCCTCTACAATTAGTACATCAAGTATAATGAACGGAAGTCAACAAAAGGAAACAGCATTGGTTAAATCAGTTTGTGGTTTAGAATCTCTTCCTACTACCGAAGAGGGTGAGTTTGAGAAGGAAGAACAATGTGGTCAAAAGGTTGCTGAAGCAATGCAAACTGCTTTAGATCTGGATATAGATAGTGAAGAATTGAATATGAGTGGAGATGGTGGATTATTGGATTCTGCTATTTTAAAAGAAAAACATGAAATGCGCAGTGGAGAGGAATTAGACAAATTAGTTTGTGTGAACAATGCAATTAATTCTTCCAATATTCTGATTGAAAAAGAAGACGTAGAAGAGGGAGAAATTTCTGGAGACTTTGGAATGGCTGACAATTCATTTGATATGTCTTCTGCAGATTCTTTAATTTTACAACAGGTGAATGTAGATGAGGTTCAGAAGCCCAAAAATAGAATAGAAAATGTGGAACCTAGGACTAGTGATAAAAATGGGATTGCATTTGGAACTAAAGTAGCTATCTCTCGAGAAACAAATAAATGTGATAAGGCAGGTCAATGTGTCTCTGTGCTGAAGCCTGATAATAGCAAAGACAGACACATAGGAAGTAAAGGGATCAATGAAGTGCCAACAAATTTAACTCAAAATCAAGTCTTGCGCAGAGGTTCCTTGGAAGAAAACGCTACCAAAGATCATGTTAACTCGTCTGCAGCAAAGAAGATGGTTGATGTCAGCGAAAAGAAAAAACGTGGTCCTGGTTCTGAGGAGAAGAAAGATAAAAAGAAGGCAAAGAAACGAAAGAAGCGAGCAGAAGAGAACAGAAAACAAGGTGTTAAAAGGATGAAGTTGCTTCCAGTACTGAAACCAAAAACTGTCATGCATTGTCGCCATTATCTCAAGGGAAGGTGCCATGAGGGTGACAAGTGCCATTTTTCACATGATACAGTGCCATTGACAAAATCCACGCCTTGCAGTCACTTTACTCGTGGAAAATGCTTGAAAGGGGATGACTGCCCATTTGATCATCAGCTTTCCAAGTATCCTTGTAACAATTTTGTGTCCAAAGGCTCTTGTATCAGAGGTTATGCTTGTATGTTTTCACACCAGGTGCCAGCCAAGCAAGATATTCCTACTCCTTCAAATGTTTCCATACCAGAGTTGAAGTCTCCACACCCGTCTGGAAATATAAATTTAAATATTACACTTAACAATCATGGTAGTTTTGTCCAGCAAAATCACTTTACCAATTCTTCAGGAACTCATTCTCACATCAATGCAGAACATAAGGTGGCAGACACTGTGCAGAAACAGCCTACCCGGGCACCCAAAGGAATTAGTTTCATCAATGTTGCAAAATTATCACTCAGCCCTAATACACCGAAACAAGGAGTGGTAACACAAAACAAGGAAAGTCTTGTCCAAAGTGGAACCCGATCAGACCAAAGTATATCTGGCAAAACACCAAACACACTGGAAATTCCTAAGAAATTTTCAGCTGTGACACCTAAGGGAATTAACTTTCTTTCTTTTGGTAAAGGTCCTGTTTGCAGTTTTAAAAGTTCTATTAGCTCCCTTGTAATGAGGGAAAATGGTGTCAAGTTTCCTCAGTTAGTCAATTTTGGTTTGCCCGAGCAGGCAAGTTCTCTGAATAAGGATGATCACAGCAAAGTTAGTGAGGGAACAAAACAAAATGTACCGCAGACTGATCTATTCTCAAAGGAGATTTCAGACACAAATCAATCTGTGGCAGAAGGAATGAAATTTAAGTTTCCAGGGAATGTTTCCACAGATGATTCTACAACTGATTTACGGTGCAGCTTGCTCTCTAACCGGGATCACAAACATAGTAAATCAGTTCAAGAGGGAAAAAAGACATCTGATGATTCTCGGACTTCAAATGTGACCTCATCTATGCTTCTGGTTTCTCCATTTGTTTCACGTCAATATTCAGAACGCCTAGTATCTGGATATCATAAACAAGCATCAAACTCAGGCCAAAGAGCATTCTTATCGACTTTAGAATTTGCAGCAGAGCATGAATCGGATATTAAGATGAAATGCTGTGCTGGTGCTTCACCTGTATGA 2757 0.4015 MEKVELGISEPSQFPPYRRSHLRSQTYHTLVRIISHLSASTTHSLNVPDNGSGRMGQEIQEKEPECSEFVSSGFMDPKDPVPKKEEILEVHETIDGVGDKVMDFSANMIVLDDLELMMGLEETSTQADGFNMEQRLMDELELVVKGTEDLVCDSGLIPLNSGLDDKQNGGSEVELMDYQVQHSDVNTSENASKLQVRGELNQLASQGFHPSLMFNVDTSTMGQASTISTSSIMNGSQQKETALVKSVCGLESLPTTEEGEFEKEEQCGQKVAEAMQTALDLDIDSEELNMSGDGGLLDSAILKEKHEMRSGEELDKLVCVNNAINSSNILIEKEDVEEGEISGDFGMADNSFDMSSADSLILQQVNVDEVQKPKNRIENVEPRTSDKNGIAFGTKVAISRETNKCDKAGQCVSVLKPDNSKDRHIGSKGINEVPTNLTQNQVLRRGSLEENATKDHVNSSAAKKMVDVSEKKKRGPGSEEKKDKKKAKKRKKRAEENRKQGVKRMKLLPVLKPKTVMHCRHYLKGRCHEGDKCHFSHDTVPLTKSTPCSHFTRGKCLKGDDCPFDHQLSKYPCNNFVSKGSCIRGYACMFSHQVPAKQDIPTPSNVSIPELKSPHPSGNINLNITLNNHGSFVQQNHFTNSSGTHSHINAEHKVADTVQKQPTRAPKGISFINVAKLSLSPNTPKQGVVTQNKESLVQSGTRSDQSISGKTPNTLEIPKKFSAVTPKGINFLSFGKGPVCSFKSSISSLVMRENGVKFPQLVNFGLPEQASSLNKDDHSKVSEGTKQNVPQTDLFSKEISDTNQSVAEGMKFKFPGNVSTDDSTTDLRCSLLSNRDHKHSKSVQEGKKTSDDSRTSNVTSSMLLVSPFVSRQYSERLVSGYHKQASNSGQRAFLSTLEFAAEHESDIKMKCCAGASPV 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2420g00006 918 MobiDBLite consensus disorder prediction 445 502 - -
Gabi2420g00006 918 SMART c3hfinal6 542 568 IPR000571 GO:0046872
Gabi2420g00006 918 SMART c3hfinal6 570 594 IPR000571 GO:0046872
Gabi2420g00006 918 SMART c3hfinal6 512 539 IPR000571 GO:0046872
Gabi2420g00006 918 Coils Coil 477 504 - -
Gabi2420g00006 918 MobiDBLite consensus disorder prediction 416 435 - -
Gabi2420g00006 918 Pfam CCCH-type zinc finger 518 538 IPR041367 -
Gabi2420g00006 918 ProSiteProfiles Zinc finger C3H1-type profile. 542 569 IPR000571 GO:0046872
Gabi2420g00006 918 Gene3D - 477 543 - -
Gabi2420g00006 918 MobiDBLite consensus disorder prediction 834 852 - -
Gabi2420g00006 918 MobiDBLite consensus disorder prediction 834 857 - -
Gabi2420g00006 918 ProSiteProfiles Zinc finger C3H1-type profile. 572 595 IPR000571 GO:0046872
Gabi2420g00006 918 SUPERFAMILY CCCH zinc finger 514 538 IPR036855 GO:0046872
Gabi2420g00006 918 Gene3D - 544 608 - -
Gabi2420g00006 918 ProSiteProfiles Zinc finger C3H1-type profile. 513 540 IPR000571 GO:0046872
Gabi2420g00006 918 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 306 911 IPR045124 GO:0003723|GO:0045892
Gabi2420g00006 918 MobiDBLite consensus disorder prediction 448 483 - -
Gabi2420g00006 918 SUPERFAMILY CCCH zinc finger 545 567 IPR036855 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2420g00006 zf-CCCH_4 1.5e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2420g00006 - - aprc:113854397 1004.2