Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2420g00003 ATGGGTAGGAGAGCCACCCCGGCGGCTGCGGCGGCGGCCGGACTCGACGCACCCGGTTCGAAGCCGGTTTTTTTCAAAGAGCCGAGATACCGGGGCGTGAGAAAAAGACCGTGGGGCCGGTTCGCCGCTGAGATCAGAGACCCTTTGAAGAAGGCCAGGGTGTGGCTTGGCACATTCGACACCGCCGAGGAGGCGGCGCGTGCATATGACACCGCCGCCAGAACCCTCAGGGGACCCAAGGCAAAAACCAATTTCCCTCTCTCACCACCTTTTTACCATAATGACGCCGTGGATCCATTCGCCGATCACCGGTTCTACGTCGCCGCCGCTTCCGCCGCCGCCGAAGGCTTTCAGGATCACCGGAGACCTACCTCCAGCGGCATGAGCAGCACCGTTGAATCCTTCAGCGGTCCTCGCCCTGCAGGTCCGCCGGCGCCGCCGTTAGCCGCCTCCCGGAGATACCCCAGGACCCCGCCCGTCGTCCCCGAGGACTGCCGCAGCGACTGCGACTCGTCGTCGTCGGTAGTCGACGACGGAGACGGTGACAACGTGGCTTCCTCGTCGTCTCGCCGTCAGCCGTTGCCGTTTGATCTCAACGCGCCGCCGTTGGATGATGCTGATGAGGCGGCGTACGGAGGCGGGGATGACCTCCACTGCACCGTTCTCTGCCTCTGA 675 0.6444 MGRRATPAAAAAAGLDAPGSKPVFFKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDTAARTLRGPKAKTNFPLSPPFYHNDAVDPFADHRFYVAAASAAAEGFQDHRRPTSSGMSSTVESFSGPRPAGPPAPPLAASRRYPRTPPVVPEDCRSDCDSSSSVVDDGDGDNVASSSSRRQPLPFDLNAPPLDDADEAAYGGGDDLHCTVLCL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2420g00003 224 MobiDBLite consensus disorder prediction 122 136 - -
Gabi2420g00003 224 MobiDBLite consensus disorder prediction 167 194 - -
Gabi2420g00003 224 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Gabi2420g00003 224 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Gabi2420g00003 224 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 199 - -
Gabi2420g00003 224 FunFam Ethylene-responsive transcription factor 2 29 87 - -
Gabi2420g00003 224 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Gabi2420g00003 224 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Gabi2420g00003 224 MobiDBLite consensus disorder prediction 116 208 - -
Gabi2420g00003 224 SUPERFAMILY DNA-binding domain 29 88 IPR016177 GO:0003677
Gabi2420g00003 224 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Gabi2420g00003 224 MobiDBLite consensus disorder prediction 139 153 - -
Gabi2420g00003 224 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Gabi2420g00003 224 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2420g00003 Gabi-Chr2420 77889 79387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2420g00003 26 224 AP2-EREBP Transcription Factor Family AT3G20310 58.407 2.41e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2420g00003 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2420g00003 K09286 - gmx:100782025 278.87