Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2420g00002 ATGGTTAGCGAAGAAGAGAGGGTTCTGGAAAAGCAAATCGAACTTCAATTGCAAGAACAAAGGGATTCTCTCTTTGCTATTGATCAAGCTCTTCTCTCTGATCCAACCAATTCCGAGCTCCTCGCGGTTCACGAGGAACTTGTCCAGGCAATTAACGATGCAGAGGAAGGACTTTTTCACCTAAAACGTGCACGATTGTTACAGGAAGCTGATTCAGTGCTGCATAGCACTAATATTTTTCCTGAAGAAGAGAAAGTGGAGCCCCTTGATCCCACCGATGTTGAACCAGAGCCACTGGAGGAAAATTGTTATTCTGTTGGATCTAAATGTAGATTCCGTCACAAAGATGGGCGTTGGTACAATGGTCAAGTGGTGCAGTTGGATAATTCAGTGGCAAAGATTTCATTCCTTACTCCCAGATCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGGTTTGGTACTAACTGTCGCCTATCACATGGAGTTGATGTTCAATTGTCCTCCCTTAGGAAATATGTTCCAACAATCTGGAAGCCGTCCCTTGTGGGATCAAGTATATGGGCAGTCTCAAATGCGAATGCAAATGCAGGCATTTGGAGAGAAGCTGAGCTTTCGTCGTGGGACGAAAAGGCTGGAGTTGGACAAGTTGTTTTTCGGGATGATGGAAGTTCTGTGAAGCTTGGTGCAGAAGAAATGGTGTTATCTGAGTATGCAGAAGCTAGTGACTTGGAGAGTGATTCCAGCTTAGAACGATCCGATTCTTGTAGCGACTTCGATGAAGAGGAATCACAAGGTTTAGGGTTTCTGGAGAGTACCAACCTACAGAGAGGTATTCAAACTGAAACTGCTATATTTGCCAAGTGGGAGAACCACACTAGAGGTGTAGCTTCCAAAATGATGGCTAATATGGGTTACCAAGAAGGAATGGGTTTAGGTTTAACTGGTCAGGGAATGCTACATCCCATACCAGTGAAGGTTCTACCACCAAAGCAATCCTTAGATCATGCACTTGAGTCTCATAAAAGAGAAGAGAACATAGGGAAGCAACGTAAGAAACGGAGCAGAGGTGGCAAGAGAAAACGCGAGAAGAAATTTGCAGAAGCAAATCGAGCAGCGAAAGAGGAAGAAGAATCGGCAGATGTCTTCACACTAATAAACAATCAGCTGGCAATGCATGGTGAGGCATTCAATGGTGGTTCAATGAAGAAGCAGCAAAGTAAAGGTTCAGGGGAAGGTAAAAAGGTGGATAGGAGGGTTTTGGTTGCTTATGAGGATGAGGTGAAGGATTTGAAGATGAGGGTTGAAAAGCTTGAACAAATGGTGAATATGAACAAAAAAGAGAAGGCTGTTTATGAGGCTGCTATGAGAAAATTAATTGAAACCCGCAAGGCTTTGGCAGAGGCTGAAGCAGTTCATGCCTCTGCATCAAATGCAGTTGTCAGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG 1491 0.4353 MVSEEERVLEKQIELQLQEQRDSLFAIDQALLSDPTNSELLAVHEELVQAINDAEEGLFHLKRARLLQEADSVLHSTNIFPEEEKVEPLDPTDVEPEPLEENCYSVGSKCRFRHKDGRWYNGQVVQLDNSVAKISFLTPRSENMLMCKFFLQQRCRFGTNCRLSHGVDVQLSSLRKYVPTIWKPSLVGSSIWAVSNANANAGIWREAELSSWDEKAGVGQVVFRDDGSSVKLGAEEMVLSEYAEASDLESDSSLERSDSCSDFDEEESQGLGFLESTNLQRGIQTETAIFAKWENHTRGVASKMMANMGYQEGMGLGLTGQGMLHPIPVKVLPPKQSLDHALESHKREENIGKQRKKRSRGGKRKREKKFAEANRAAKEEEESADVFTLINNQLAMHGEAFNGGSMKKQQSKGSGEGKKVDRRVLVAYEDEVKDLKMRVEKLEQMVNMNKKEKAVYEAAMRKLIETRKALAEAEAVHASASNAVVSKEKEKRWLKF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2420g00002 496 Pfam G-patch domain 297 339 IPR000467 GO:0003676
Gabi2420g00002 496 Coils Coil 425 476 - -
Gabi2420g00002 496 Gene3D - 144 198 - -
Gabi2420g00002 496 MobiDBLite consensus disorder prediction 351 365 - -
Gabi2420g00002 496 Coils Coil 363 383 - -
Gabi2420g00002 496 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Gabi2420g00002 496 ProSiteProfiles G-patch domain profile. 297 343 IPR000467 GO:0003676
Gabi2420g00002 496 Gene3D - 91 143 - -
Gabi2420g00002 496 MobiDBLite consensus disorder prediction 400 419 - -
Gabi2420g00002 496 MobiDBLite consensus disorder prediction 343 383 - -
Gabi2420g00002 496 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Gabi2420g00002 496 MobiDBLite consensus disorder prediction 366 383 - -
Gabi2420g00002 496 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Gabi2420g00002 496 SMART G-patch_5 295 341 IPR000467 GO:0003676
Gabi2420g00002 496 MobiDBLite consensus disorder prediction 246 271 - -
Gabi2420g00002 496 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 496 - -
Gabi2420g00002 496 SMART c3hfinal6 141 167 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2420g00002 G-patch 2.6e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2420g00002 - - gmx:100794921 724.161