Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi241g00006 ATGGAAGGAGAGAACACTACATCAAACTGTGTCTACAGAGAGTGTTTGAGAAACCATGCAGCCACCCTCGGTAGCTACGCCACCGACGGCTGCGGTGAGTTCACCCTCGACGACATGTCCCACGGCGGAAGCCTCCAATGCGCCGCCTGTGGCTGCCACCGTAACTTCCACCGGAAAGTGACATGCCCACCGAGCCCAGCAGAGACCACCACAACCACCACCAACACGGCTGATCTCATGGACTATTCCGGCGGCGGAGGCGGAGGTGAAGGGAGGTCGGCGGAGGCGGTGGAAGGAGGAGGAGTGAGGATAGGGAAGAAGAGGTTCAGGACAAAGTTCACAACAGAACAGAAAGAGAAGATGTTAGGTTTTGCAGAGAAACTTGGGTGGAAGCTGCAAAGGAAGGAACTTGATGATGAGATAGAAAGGTTCTGTAGAAGTGTTGGGGTTAGTAGACAAGTTTTCAAGGTGTGGATGCATAATCATAAGAACTCTTCTTCTAATTCTTCTGCATCCACTGGCAATGCTTCTTCTCTCACTCAATAA 546 0.5183 MEGENTTSNCVYRECLRNHAATLGSYATDGCGEFTLDDMSHGGSLQCAACGCHRNFHRKVTCPPSPAETTTTTTNTADLMDYSGGGGGGEGRSAEAVEGGGVRIGKKRFRTKFTTEQKEKMLGFAEKLGWKLQRKELDDEIERFCRSVGVSRQVFKVWMHNHKNSSSNSSASTGNASSLTQ 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi241g00006 181 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 7 165 - -
Gabi241g00006 181 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 12 59 IPR006456 -
Gabi241g00006 181 Gene3D - 91 170 - -
Gabi241g00006 181 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 12 60 IPR006456 -
Gabi241g00006 181 Pfam ZF-HD protein dimerisation region 10 61 IPR006456 -
Gabi241g00006 181 FunFam Zinc-finger homeodomain protein 2 94 168 - -
Gabi241g00006 181 NCBIfam homeobox domain, ZF-HD class 106 164 IPR006455 -
Gabi241g00006 181 SUPERFAMILY Homeodomain-like 102 164 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi241g00006 Gabi-Chr241 25499 26159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi241g00006 12 165 ZF-HD Transcription Factor Family AT4G24660 46.067 2.07e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi241g00006 ZF-HD_dimer 7.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi241g00006 - - qsu:112019750 239.195