Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2418g00003 ATGGCAGGGTTGAGGGAACAGGATCAGTACATGCCAATAGCGAATGTGATAAGGATAATGAGAAGGATTCTTCCATCACATGCGAAAATATCAGATGATGCAAAAGAGACAATACAAGAGTGTGTGTCTGAATACATAAGCTTCATAACCTCAGAAGCCAATGAGAGATGCCAGCGTGAGCAAAGGAAAACAGTAACCGCAGAGGATTTGCTTTGGGCAATGGGAAAGCTTGGCTTTGATGATTACGTTCACCCTCTTATCCTTTACCTTCACCGTTACCGTGACATTGAAGGAGAACCCTCTTCTCTCAGGCGCAGCAGCACTCTTACAATGCCTTATTCTCTGCCACCACCACCACCAACACCACAACCACAACCACAACCACCAGGTTCTTCTTATGGATATGCAATGTTTGACCCCAATTCAGTGGGGTTCTATAGGGATGATGTTGCATCTGCCTCTGCTACTCTTATTAACAGCTTTGACCCTTATGCTCACATCAAACGTGATCCTCAATGA 519 0.4489 MAGLREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITSEANERCQREQRKTVTAEDLLWAMGKLGFDDYVHPLILYLHRYRDIEGEPSSLRRSSTLTMPYSLPPPPPTPQPQPQPPGSSYGYAMFDPNSVGFYRDDVASASATLINSFDPYAHIKRDPQ 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2418g00003 172 SUPERFAMILY Histone-fold 7 106 IPR009072 GO:0046982
Gabi2418g00003 172 ProSitePatterns NF-YB/HAP3 subunit signature. 41 57 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi2418g00003 172 MobiDBLite consensus disorder prediction 112 129 - -
Gabi2418g00003 172 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 101 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi2418g00003 172 MobiDBLite consensus disorder prediction 101 135 - -
Gabi2418g00003 172 FunFam Nuclear transcription factor Y subunit B-6 1 112 - -
Gabi2418g00003 172 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Gabi2418g00003 172 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Gabi2418g00003 172 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Gabi2418g00003 172 Gene3D Histone, subunit A 2 110 IPR009072 GO:0046982
Gabi2418g00003 172 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2418g00003 Gabi-Chr2418 26229 26747 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2418g00003 4 115 CCAAT-HAP3 Transcription Factor Family AT5G47670 75.000 1.88e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi2418g00003 CBFD_NFYB_HMF 7.6e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2418g00003 K08065 - gmx:100811633 234.187