Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2418g00001 ATGGCAGGGTTGAGGGAACAGGACCAGTACATGCCAATAGCGAACGTGATAAGGATAATGAGAAGGATTCTTCCATCACATGCGAAAATATCAGATGATGCAAAAGAGACAATACAAGAATGTGTGTCTGAATACATAAGCTTCATAACCTCAGAAGCCAATGAGAGATGCCAGCGTGAGCAAAGGAAAACAGTAACCGCAGATGATTTGCTTTGGGCAATGGGAAAGCTTGGCTTTGATGATTACGTTCACCCTCTTATCCTTTACCTTCACCGTTACCGTGACATTGAAGGAGAACCCTCTTCTCTCAGACGCAGCAGCACTCTTACAATGCCTTATTCTCCGCCACCACCACCAACACCAACACCACAACCACAACCACCAGGTTCTTGTTATGGATATGCCATGTTTGACCCTAATTTAGTGGGGTTCTATAGGGATGATGTTGCATCTGCCTCTGCTACTTTTATTAACAGCTTTGACCCTTATGCTCACATCAAACGTGATCCTCAATGA 516 0.4438 MAGLREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITSEANERCQREQRKTVTADDLLWAMGKLGFDDYVHPLILYLHRYRDIEGEPSSLRRSSTLTMPYSPPPPPTPTPQPQPPGSCYGYAMFDPNLVGFYRDDVASASATFINSFDPYAHIKRDPQ 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2418g00001 171 FunFam Nuclear transcription factor Y subunit B-6 1 112 - -
Gabi2418g00001 171 ProSitePatterns NF-YB/HAP3 subunit signature. 41 57 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi2418g00001 171 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Gabi2418g00001 171 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Gabi2418g00001 171 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Gabi2418g00001 171 Gene3D Histone, subunit A 2 110 IPR009072 GO:0046982
Gabi2418g00001 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 101 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi2418g00001 171 MobiDBLite consensus disorder prediction 101 130 - -
Gabi2418g00001 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Gabi2418g00001 171 MobiDBLite consensus disorder prediction 111 128 - -
Gabi2418g00001 171 SUPERFAMILY Histone-fold 7 104 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2418g00001 Gabi-Chr2418 10296 10811 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2418g00001 5 142 CCAAT-HAP3 Transcription Factor Family AT1G21970 63.265 2.62e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi2418g00001 CBFD_NFYB_HMF 1.4e-25 CL0012