Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2417g00023 ATGGAAACACTGAACAAGGAGCAATACCTCTCTGACAGACCCACCATCATCTCTGCTCCAGAGGCTCCTCCAAGTCCAAATACCCCATTGCAGAATCCACTGGAAAAGAAACATCAATCTCTTGAGGAAGAAGAGGAAGAAAGGGAGACAAAGGTGGATACTTTATTGGATCTAAATATATCTGACAATGATTCTGCTCCTGGTTGCAGTCTTGAAAGACAAGAACTCAATCTCATCACTTGTTTGGATGTTGATTCATCTAATGCTAATTCATCAGAAAACCCTCTTGTTTCTGTTGATGCAGAGCCACGAGTCTTCTCTTGCAACTACTGCCATAGAAAATTCTACAGTTCACAAGCTCTCGGGGGCCACCAAAATGCTCACAAGAGAGAAAGGTCCATAGCAAAAAGAGGGCACAGGTTTGGAACACAGATAATGGTTTCAGCAGCAGCTTTTGGGCTTCCTCTTCTGCATAACCACCGCTATGCAAGCATGGCTTCTCTACCCCTTTATGGTTCTTCAAGTAATAACCCTCTTGGAATTCAAGCACACTCCATGATCCACAAGCCTTCTCATATTTCCTCTAATGGGTTATTAGGAAGCTCTTATGGACATCATCATGGTTGGTCAAGACCCCTTATTGATCAACAACCAGCAATAGCAAAGCTAGCTGTGGCAGATTTTCACAGAACAACATCAGTGTTATCATCACGAGGTAGTGTTGGTAGGTTTGAAGGGGTAAATACTATGATGAATTCTGCAGCCAATAAAGAAATCAGTGGATATTTGGTTAGTGGTGGAACTCGTTTGAAGACTAGTAATCCAGAAGAAATGAAGCACCTTGATTTATCCCTCAAGCTCTGA 864 0.4248 METLNKEQYLSDRPTIISAPEAPPSPNTPLQNPLEKKHQSLEEEEEERETKVDTLLDLNISDNDSAPGCSLERQELNLITCLDVDSSNANSSENPLVSVDAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGTQIMVSAAAFGLPLLHNHRYASMASLPLYGSSSNNPLGIQAHSMIHKPSHISSNGLLGSSYGHHHGWSRPLIDQQPAIAKLAVADFHRTTSVLSSRGSVGRFEGVNTMMNSAANKEISGYLVSGGTRLKTSNPEEMKHLDLSLKL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2417g00023 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Gabi2417g00023 287 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Gabi2417g00023 287 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 287 IPR044246 GO:0009788
Gabi2417g00023 287 SUPERFAMILY beta-beta-alpha zinc fingers 103 133 IPR036236 -
Gabi2417g00023 287 Gene3D Classic Zinc Finger 96 150 - -
Gabi2417g00023 287 MobiDBLite consensus disorder prediction 36 55 - -
Gabi2417g00023 287 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2417g00023 Gabi-Chr2417 297171 298146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2417g00023 11 287 C2H2 Transcription Factor Family AT5G10970 40.893 3.22e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2417g00023 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2417g00023 - - lja:Lj5g3v0526470.1 339.347