Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2417g00019 ATGGCCAGGCCTCAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGTTCTTGGGTCTCTGAGATTCGCCACCCTATATTGAAAACTAGGATATGGCTTGGTACTTTTGAGACAGCTGAGGATGCTGCTAGAGCCTATGATGAAGCAGCTAGACTAATGTGTGGTGTGAGGACGAGAACAAACTTCCCTTTCAACCCCAATGTGTCTTCTCAGTCATCATCATCTTCTTCAAAGCTTCTCTCAGCAACTTTGACTGCTAAACTTCACAAGTGCTATATTGCTTCTTTGCAAATGATTAGGCAAAAGTTACCAGAGCCTCAGAGAGTAGCTTCAGTTCCAAATGTCATCACCACCACAACCACCAGCAACTTCAATGTGAATAGTAGGGAAACTGATACTGTGTTGTCACATAAGAGACCAAAGCAGGAACAAGAACTAGAGGATAACATGGTGTTCAAGAAGGTTACATCTGTGGACAGTGCTCCTCAACAGTTCAAGCCTCTTGAAGAAGATCATATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGGTCTATTGAGCTCTGTTGTCATTCTAATTCAGGGTCTTTAATTGATGCACAAGCAATGCCACAACACCCAAGATGTTAG 633 0.436 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGVRTRTNFPFNPNVSSQSSSSSSKLLSATLTAKLHKCYIASLQMIRQKLPEPQRVASVPNVITTTTTSNFNVNSRETDTVLSHKRPKQEQELEDNMVFKKVTSVDSAPQQFKPLEEDHIEQMIEELLDYGSIELCCHSNSGSLIDAQAMPQHPRC 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2417g00019 210 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 136 - -
Gabi2417g00019 210 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Gabi2417g00019 210 Pfam AP2 domain 7 55 IPR001471 GO:0003700|GO:0006355
Gabi2417g00019 210 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Gabi2417g00019 210 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Gabi2417g00019 210 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Gabi2417g00019 210 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Gabi2417g00019 210 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Gabi2417g00019 210 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Gabi2417g00019 210 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2417g00019 Gabi-Chr2417 204176 205193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2417g00019 1 190 AP2-EREBP Transcription Factor Family AT5G25190 62.371 3.32e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2417g00019 AP2 9.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2417g00019 - - gmx:100807612 268.085