Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2417g00014 ATGGCTGCTTCCTCTCCAGGTATTCTAATGGGGGATGAACAGCAACAAATGGATTCACACAAGAAAATGGTAATAGCTTTCATCGTAGCCAGCACTGCACTTGGTGCAGTCATTTTGTGTGTGCTTTGCTTCTGGATTTATTACACCAAGTATCATTCAAAATCCAACAGGAAAAACCTTCAAAGCTCAGATGCTGAGAAAGGGCTCGCTTTAGCTCCATTTTTGAGTAAATTCAGTTCTGTCAAGATGGTTGGTAAGAAAGGGAGTGTTCCAATAATTGATTATAAGCAAATAGAAAAAGCCACCGGCAATTTCAGGGAAAGTAACATCTTGGGTGAGGGTGGTTTTGGATGTGTTTACAAGGCTAGGTTTGATGATAATTTGGACGTTGCCATCAAGAAACTGCACTGTGAATGTCAGGATGCTGAACGAGAATTTGAGAATGAGGTGGATTTGTTAAGCAAAATTCAACATCCAAATGTAATTTCTCTACTGGGTTGTAGCAGTAATGAAGATACGAGGTTTATTGTCTATGAATTGATGCATAATGGATCATTGGAAACTCAATTACATGGACCTTCTTGTGGCTCGGCTTTGACTTGGCATATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGATTAAAATATCTACATGAGCACTGTTACCCTCCGGTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTAGATGCAAACTTCAATGCCAAGCTTTCTGATTTTGGTCTTGCCATAACTGATGGGTCCCAAAACAAGAACAACATGAAGCTTTCAGGCACCTTGGGATACGTAGCCCCAGAGTATCTTTTAGATGGTAAATTGACTGATAAAAGCGATGTCTATGCTTTTGGAGTCGTGCTTCTGGAGCTTCTATTGGGAAGGAAACCTGTGGAAAAATTGGCACCAGCTCAATGCAGATCTATTGTCACATGGGCCATGCCACAGCTTACAGACAGATCCAAGCTTCCAAACATTGTGGATCCTGTGATCAAGAATACAATGGATCTCAAGCACTTATACCAGGTTTGA 1053 0.4074 MAASSPGILMGDEQQQMDSHKKMVIAFIVASTALGAVILCVLCFWIYYTKYHSKSNRKNLQSSDAEKGLALAPFLSKFSSVKMVGKKGSVPIIDYKQIEKATGNFRESNILGEGGFGCVYKARFDDNLDVAIKKLHCECQDAEREFENEVDLLSKIQHPNVISLLGCSSNEDTRFIVYELMHNGSLETQLHGPSCGSALTWHMRMKIALDTARGLKYLHEHCYPPVIHRDLKSSNILLDANFNAKLSDFGLAITDGSQNKNNMKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPAQCRSIVTWAMPQLTDRSKLPNIVDPVIKNTMDLKHLYQV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2417g00014 350 SUPERFAMILY Protein kinase-like (PK-like) 84 336 IPR011009 -
Gabi2417g00014 350 ProSiteProfiles Protein kinase domain profile. 105 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2417g00014 350 Pfam Protein tyrosine and serine/threonine kinase 108 341 IPR001245 GO:0004672|GO:0006468
Gabi2417g00014 350 FunFam Protein kinase superfamily protein 72 180 - -
Gabi2417g00014 350 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Gabi2417g00014 350 FunFam probable receptor-like protein kinase At1g80640 181 350 - -
Gabi2417g00014 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Gabi2417g00014 350 Gene3D Transferase(Phosphotransferase) domain 1 181 350 - -
Gabi2417g00014 350 SMART serkin_6 105 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2417g00014 350 Gene3D Phosphorylase Kinase; domain 1 71 180 - -
Gabi2417g00014 350 Coils Coil 132 152 - -
Gabi2417g00014 350 PANTHER OS01G0750732 PROTEIN 15 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2417g00014 Gabi-Chr2417 175494 178367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2417g00014 1 321 Receptor kinase-like Gene Family AT1G80640 50.617 8.14e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Gabi2417g00014 PK_Tyr_Ser-Thr 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2417g00014 - - gmx:100812044 628.246