Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2417g00006 ATGGCGTATCATAACCACAACCTCTCTCAAGACCTACCATTCCACCATTTGACAGAGCAATCCAACGTTAACGCCGGTGGCTCCGGCCCACACGAACACCACTCTCTCCAAACCGCACCTAATTGGCTCAACAACGCCCTCCTTCGCACCCACTACACCGACAACAATAACGCAAACAACGACACCAACGTTAACGCCCCCAACGGTAACAACGCTTCCAATTTCCTCAACCTCCACACGGCTTCCGAATCCACCGCCGTCCATTCCTCCGGCCAATGGCTCGCCCCTCGCCCGATCCTCCACCGAAACCACAGCGAAGTCATCGATAACGTCGCTTCCGCCGCCGGTGACTCCATCGTCGCCGGCAGGCCTGCCGCCTTTTCCCACGATTCCGCAGATTTGAAGGTTGCCGCCGGCGACAACCTCGGCAGCAAGACCGAGGCAGTGGTCGGCGATGTCGACGGCGGCGGCGGAGGCCTGGCGAACTGGCAGATTGGTAGGTGCAAGGCGGAGATTCTGGCGCACCCGCTTTATGAACAGCTGTTGTCGGCACACGTGGCATGCTTGAGGATCGCCACGCCGGTGGACCAGCTGCCGAGGATCGACGCTCAGCTGGCGCAGTCGCAGAATGTGGTGGCCAAGTACTCGGCTTTCGGACATGGGGCTCAGAACATGGTTGGGGATGACAAGGAACTCGACCAGTTTATGTCGCATTATATTTTGTTGCTCTGTTCCTTCAAAGAACAATTACAACAACATGTCCGTGTTCATGCTATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAGTCCTTACAAAGTCTAACAGGAGTTTCACCCGGAGAAGGTACAGGGGCAACAATGTCTGATGACGAAGATGAACAAATAGATAGTGATGTTAATCTGTTTGATGGTAGTTTTGACGGCTCAGATAACATGGGATTTGGCCCTCTTATTCCTACAGAGAATGAGAGGTCCCTCATGGAGCGTGTAAGACAAGAATTAAAGCATGAATTGAAACAGGGTTATAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACAACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAAGATAAGGTAAGGTTGGTGCAGGAAACTGGTTTGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAAAGAAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGGTGA 1296 0.5123 MAYHNHNLSQDLPFHHLTEQSNVNAGGSGPHEHHSLQTAPNWLNNALLRTHYTDNNNANNDTNVNAPNGNNASNFLNLHTASESTAVHSSGQWLAPRPILHRNHSEVIDNVASAAGDSIVAGRPAAFSHDSADLKVAAGDNLGSKTEAVVGDVDGGGGGLANWQIGRCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGHGAQNMVGDDKELDQFMSHYILLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQIDSDVNLFDGSFDGSDNMGFGPLIPTENERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKVRLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2417g00006 431 Pfam Homeobox KN domain 374 413 IPR008422 GO:0003677|GO:0006355
Gabi2417g00006 431 MobiDBLite consensus disorder prediction 53 74 - -
Gabi2417g00006 431 Gene3D - 353 425 - -
Gabi2417g00006 431 SMART ELK_2 334 355 IPR005539 GO:0003677
Gabi2417g00006 431 Pfam KNOX2 domain 226 276 IPR005541 GO:0003677|GO:0005634
Gabi2417g00006 431 Pfam KNOX1 domain 169 209 IPR005540 GO:0003677|GO:0005634
Gabi2417g00006 431 ProSiteProfiles ELK domain profile. 334 354 IPR005539 GO:0003677
Gabi2417g00006 431 FunFam homeobox protein knotted-1-like 3 isoform X1 355 416 - -
Gabi2417g00006 431 ProSiteProfiles 'Homeobox' domain profile. 354 417 IPR001356 GO:0003677
Gabi2417g00006 431 SUPERFAMILY Homeodomain-like 356 419 IPR009057 -
Gabi2417g00006 431 SMART KNOX1_2 166 210 IPR005540 GO:0003677|GO:0005634
Gabi2417g00006 431 SMART KNOX2_2 222 277 IPR005541 GO:0003677|GO:0005634
Gabi2417g00006 431 Pfam ELK domain 334 355 IPR005539 GO:0003677
Gabi2417g00006 431 CDD homeodomain 357 418 IPR001356 GO:0003677
Gabi2417g00006 431 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 146 416 - -
Gabi2417g00006 431 SMART HOX_1 356 421 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2417g00006 Gabi-Chr2417 110982 116677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2417g00006 1 431 Homeobox Transcription Factor Family AT5G25220 66.520 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi2417g00006 KNOX2 2.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2417g00006 - - pcin:129303573 661.759