Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2417g00005 ATGGCGTATCATAACCACAACCTCTCTCAAGACCTACCATTCCACCATTTGACAGAGCAATCCAACGTTAACGCCGGTGGCTCCGGCCCACACGAACACCACTCTCTCCAAACCGCACCTAATTGGCTCAACAACGCCCTCCTTCGCACCCACTACACCGACAACAATAACGCAAACAACGACACCAACGTTAACGCCCCCAACGGTAACAACGCTTCCAATTTCCTCAACCTCCACACGGCTTCCGAATCCACCGCCGTCCATTCCTCCGGCCAATGGCTCGCCCCTCGCCCGATCCTCCACCGAAACCACAGCGAAGTCATCGATAACGTCGCTTCCGCCGCCGGTGACTCCATCGCAGTGGTCGGCGATGTCGACGGCGGCGGCGGAGGCCTGGCGAACTGGCAGATTGGTAGGTGCAAGGCGGAGATTCTGGCGCACCCGCTTTATGAACAGCTGTTGTCGGCACACGTGGCATGCTTGAGGATCGCCACGCCGGTGGACCAGCTGCCGAGGATCGACGCTCAGCTGGCGCAGTCGCAGAATGTGGTGGCCAAGTACTCGGCTTTCGGACATGGGGCTCAGAACATGGTTGGGGATGACAAGGAACTCGACCAGTTTATGTCGCATTATATTTTGTTGCTCTGTTCCTTCAAAGAACAATTACAACAACATGTCCGTGTTCATGCTATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAGTCCTTACAAAGTCTAACAGGAGTTTCACCCGGAGAAGGTACAGGGGCAACAATGTCTGATGACGAAGATGAACAAATAGATAGTGATGTTAATCTGTTTGATGGTAGTTTTGACGGCTCAGATAACATGGGATTTGGCCCTCTTATTCCTACAGAGAATGAGAGGTCCCTCATGGAGCGTGTAAGACAAGAATTAAAGCATGAATTGAAACAGGGTTATAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACAACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAAGATAAGGTAAGGTTGGTGCAGGAAACTGGTTTGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAAAGAAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGAAGTAATGCAGGTGATAATAGTGTTGATCGTTACATGTAA 1248 0.4968 MAYHNHNLSQDLPFHHLTEQSNVNAGGSGPHEHHSLQTAPNWLNNALLRTHYTDNNNANNDTNVNAPNGNNASNFLNLHTASESTAVHSSGQWLAPRPILHRNHSEVIDNVASAAGDSIAVVGDVDGGGGGLANWQIGRCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGHGAQNMVGDDKELDQFMSHYILLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQIDSDVNLFDGSFDGSDNMGFGPLIPTENERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKVRLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSNAGDNSVDRYM 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2417g00005 415 FunFam homeobox protein knotted-1-like 3 isoform X1 327 388 - -
Gabi2417g00005 415 Pfam Homeobox KN domain 346 385 IPR008422 GO:0003677|GO:0006355
Gabi2417g00005 415 MobiDBLite consensus disorder prediction 53 74 - -
Gabi2417g00005 415 Pfam ELK domain 306 327 IPR005539 GO:0003677
Gabi2417g00005 415 ProSiteProfiles 'Homeobox' domain profile. 326 389 IPR001356 GO:0003677
Gabi2417g00005 415 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 91 392 - -
Gabi2417g00005 415 ProSiteProfiles ELK domain profile. 306 326 IPR005539 GO:0003677
Gabi2417g00005 415 SMART KNOX2_2 194 249 IPR005541 GO:0003677|GO:0005634
Gabi2417g00005 415 Gene3D - 327 388 - -
Gabi2417g00005 415 MobiDBLite consensus disorder prediction 389 415 - -
Gabi2417g00005 415 SMART HOX_1 328 393 IPR001356 GO:0003677
Gabi2417g00005 415 Pfam KNOX2 domain 198 248 IPR005541 GO:0003677|GO:0005634
Gabi2417g00005 415 Pfam KNOX1 domain 141 181 IPR005540 GO:0003677|GO:0005634
Gabi2417g00005 415 CDD homeodomain 329 390 IPR001356 GO:0003677
Gabi2417g00005 415 SMART KNOX1_2 138 182 IPR005540 GO:0003677|GO:0005634
Gabi2417g00005 415 SUPERFAMILY Homeodomain-like 328 391 IPR009057 -
Gabi2417g00005 415 SMART ELK_2 306 327 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2417g00005 Gabi-Chr2417 110982 116677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2417g00005 1 403 Homeobox Transcription Factor Family AT5G25220 67.117 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi2417g00005 KNOX2 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2417g00005 - - pcin:129303573 636.721