Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2417g00001 ATGGATCCAAGACAAGACCAGTCAAATCAACATAATGAGGATAAGCTGGAGTTCTCAAGATGCTCAAAAAAATTTGGAACTTCAAAGAGAAAGGCTGAAGAAATTCATGAGCATGGTAATAAGAAACCAAAACCTGAAGGAGAACAAGTAAATATGGGACATTTAAAGAACAGTACCGCTGTAAGAATGGAGGTTACGGCTGCAAGACGAGACCAGTCAAATCAACATAATGAGGATAAGCTGGAGTTCTCAAGATGCTCAAAAAAATTTGGAACTTCAAAGAGAAAGGCTGAAGAAATTCATGAGCGTGGTAATAAGAAACCAAAACCTGAAGGGGAACAAGTAAATATGGGACGTTTAAAGAACAGTACCGCTGTAAGAATGGAGGTTACAGCTGCAAGACGAGAACAGTCAAATCAACCTAACAATAATAAGCCGGACAAACTCTCTAAATGCTCTAGGCCTCTTAGAATGTCAAAGAAGGGAAAGGTTCAGGAGATTCATAAACTTGATATCACGAAACCAAAGTCAGAACCCAAAGAAGACAATCTGGTAAGTTCAAAAAGGACCACTAAATTTTCATCCAATAAAGGAGATGAGCCAAAGAAGCTTACTACCTCAAACAAGAAAAGGAAATTTGAAGATGATTTCTTAATTAACAAATTGGAAGAAGATGAAGAAATGTTTTTTCTTTCAAAGACAAAGACCAGGAGCAGAGCTAAAAGAATGGATGACATGATGGATGTCGAGCAAAATCCCCGGAAATGTCATCAGTGCATGAAAAAGGAGAGAACAGCTTTTGTGCCTTGTACTAAATGTCTGAAAATGTACTGTATGCGATGCATCAATCTATGGTACTCTAATATGTCAATAGAAGAAATTGCTGAAAGCTGCCCATATTGCCGTAAAAACTGCAATTGCAATGTTTGCTTGCGTTCAAGAGGAATGATTAAGACATCCAGCAGGGACATCACTGATTATGAGAAAGCTCAATATATGCAATATATGATTAACTTACTCCTTCCATTTCTTGAACAAATTTGTCATGAACAATGTCAAGAGGAGGATATTGAAGCTAAAATACAAGGAAAATCTTCTTGTGAGATTGAGATACACCAAAGTCTTTGTGGTGACAATGAACGTGTCTATTGTGACCATTGTGCTACTTCAATTGTTGACCTTCACCGAAGGTGCCCCGAGTGTTCTTATGAACTCTGTCTCACTTGTTGCCAAGAAATACGCAAGGGAAGCATTACTTCCCGGGATGAGCTGAAGTTCCAATACGTGAATAGGGGTTATGATTATATGCATGGTGGTGACCCTCTACCAGTGTCTTGTGATGTAGAGACTTCAAAGGGACATATTGAGCTATCTACTAAGTGGAATGCCAAAAGTCATGGAAGTGTTAGTTGTGCTCCAAAGGAGGGAGGAGGTTGTGGTAGTTCTGAATTGGAGCTAAGGCGCATCCTTCAACGTGGGTGGATATCTGACTTGGAAGCAAAAGCTCGTGATGTGTTGAAGATTTGGGAAATTGAACAAATGAGAAGGGTGGCACTTGGAGAAGGCACAAACGACAATAACATATACTGTCCAGAGTCAAGAGACATTTTAAAAGAAGAATTATTACTCTTTCAAAGGCATTGGACTAATGGTGAACCAATTATAGTTAGAGATATTCTTAAACAGGGGACAGGTCTGAGCTGGGAGCCAATGGTCATGCGGCGAGTATTATGTGAAAATAGAGTTTCAGAAATCAGCTCAAGAATGTCAGAAGTTAAGGCCATTGATTGCCTGGCTAATTGTGAGGTAGAAATTAATACTCATAAGTTTTTTAAAGGTTATACTGAGGGAAGAACATATCAAAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAAATCTTTTGCCTCGCCATTGTGATGAGTTTATTCGTTCCTTGCCATTTCAAGAGTACACTGATCCTGGGGCTGGAATTGTCAATCTTGCTGTAAAGTTGCCAGCCCATGTCCTAAAACCTGACATGGGTCCAAAAACATACATTGCTTATGGGATTAAAGAAGAACTTGGTAGAGGAGACTCTGTAACAAAACTTCACTGTGATATGTCAGATGCGGTGAATATTTTGACCCATACGGCCGAGGTGATATTAAGTGATGAGCAGCTCTCTATTATTTCAAAGTTGAAAGAAGCACACAAGGCACAAGATGAGAAAGAACATTGTGCACAGGAGAGGATTGGTGAATGCCTGAATGGTGGACCTTGCAATAACAACAAAGAACATATAAAAGATAAGGAAGTCTTAGAACCTAAAGATATGGAGAAGCGCCCTTTTGAAATTAATGGGAAGATATTTCAAAATGATGTGTCTGAGGGGGTCATTTTTGCTGCTATTTCTCCAGAAAATGAACCAACGGAAACAGGTGGTGCCCTATGGGATATCTTTAGGAGAGATGATATTGAAAAGTTAGAAACATATTTAAGAAAACACTCAAAAGAATTTAGACATACTTATTGTTCTCCGGTTGAACAGGTATTTCATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGCTGAAGGAGGAGTTTGGTGTAGAACCCTGGACTTTTGAGCAGAAACTTGGGGAGGCTGTATTTATTCCTGCTGGATGCCCACATCAAGTGAGGAACCTCAAGTCATGCATAAAAGTTGCTGTAGACTTCGTGTCCCCAGAAAATGTTCATGAGTGTCTGCGTTTAACTAATGAGTTCCGTCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTATATGCCGTTGATCAAGCTGTCAAAGACCTTCAAGCTTTTCTAGTGGCTGATACTATCAGTTGCTGTGAATAG 2922 0.3946 MDPRQDQSNQHNEDKLEFSRCSKKFGTSKRKAEEIHEHGNKKPKPEGEQVNMGHLKNSTAVRMEVTAARRDQSNQHNEDKLEFSRCSKKFGTSKRKAEEIHERGNKKPKPEGEQVNMGRLKNSTAVRMEVTAARREQSNQPNNNKPDKLSKCSRPLRMSKKGKVQEIHKLDITKPKSEPKEDNLVSSKRTTKFSSNKGDEPKKLTTSNKKRKFEDDFLINKLEEDEEMFFLSKTKTRSRAKRMDDMMDVEQNPRKCHQCMKKERTAFVPCTKCLKMYCMRCINLWYSNMSIEEIAESCPYCRKNCNCNVCLRSRGMIKTSSRDITDYEKAQYMQYMINLLLPFLEQICHEQCQEEDIEAKIQGKSSCEIEIHQSLCGDNERVYCDHCATSIVDLHRRCPECSYELCLTCCQEIRKGSITSRDELKFQYVNRGYDYMHGGDPLPVSCDVETSKGHIELSTKWNAKSHGSVSCAPKEGGGCGSSELELRRILQRGWISDLEAKARDVLKIWEIEQMRRVALGEGTNDNNIYCPESRDILKEELLLFQRHWTNGEPIIVRDILKQGTGLSWEPMVMRRVLCENRVSEISSRMSEVKAIDCLANCEVEINTHKFFKGYTEGRTYQNLWPEMLKLKDWPPSDKFENLLPRHCDEFIRSLPFQEYTDPGAGIVNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVILSDEQLSIISKLKEAHKAQDEKEHCAQERIGECLNGGPCNNNKEHIKDKEVLEPKDMEKRPFEINGKIFQNDVSEGVIFAAISPENEPTETGGALWDIFRRDDIEKLETYLRKHSKEFRHTYCSPVEQVFHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCIKVAVDFVSPENVHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAVDQAVKDLQAFLVADTISCCE 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2417g00001 973 MobiDBLite consensus disorder prediction 1 207 - -
Gabi2417g00001 973 SMART cupin_9 643 930 IPR003347 -
Gabi2417g00001 973 MobiDBLite consensus disorder prediction 1 49 - -
Gabi2417g00001 973 MobiDBLite consensus disorder prediction 69 114 - -
Gabi2417g00001 973 SUPERFAMILY Clavaminate synthase-like 541 960 - -
Gabi2417g00001 973 Gene3D Cupin 526 939 - -
Gabi2417g00001 973 Pfam JmjC domain, hydroxylase 810 913 IPR003347 -
Gabi2417g00001 973 MobiDBLite consensus disorder prediction 133 149 - -
Gabi2417g00001 973 MobiDBLite consensus disorder prediction 150 207 - -
Gabi2417g00001 973 ProSiteProfiles Zinc finger RING-type profile. 256 302 IPR001841 -
Gabi2417g00001 973 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 22 962 IPR045109 GO:0032454|GO:0033169
Gabi2417g00001 973 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 252 320 IPR018866 -
Gabi2417g00001 973 ProSiteProfiles JmjC domain profile. 662 930 IPR003347 -
Gabi2417g00001 973 CDD cupin_RmlC-like 853 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2417g00001 Gabi-Chr2417 17525 32731 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi2417g00001 JmjC 9.8e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2417g00001 K15601 - gmx:100797860 1330.08