Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2415g00003 ATGGCAGCTTTCATTTCCAACTCAAAACCTCAACCAAGAAAAAAAATCATTCTTCTCCTCAACGTATCCTTTCTCTTCCTCCTCTTTCTCTTCCTCAAAGCCTATCTCCACCCTTCAAATTCTAATTTTCATGCCTCCACAACCATCTTCAACCATGCAAGAATGCTAAGTGACATCAGAGTTGATGGTTGCACTGATCTTCACAAGTACTCAAATTATAGCTCTAAGTGCTTATATGTCAAAACCCATCTTGACTGCAGATCAAAAGGGTACATTAACTATCTTCAAATCTTCTATTGTAATCTTGGACATTCCCCAATTTTGGGTCATGCCCTTCTTGTACTATGGCTTGTGGTGTTGTTCTATCTTTTGGGTGACACAGCTTCAAATTACTTTTGCACCTCCATAGAGGGTTTGTCTGATATCCTGAGACTATCTCCCACAATAGCTGGAGTAACCTTGCTTTCTCTAGGGAATGGTGCTCCTGATTTTTTTGCTAGTGTTGTTTCTTTCACAAGATCCAACAATGGTGCAGTTGGTCTCAATAGCATTCTGGGAGGGGCCTTTTTTGTCTCTAGTGCTGTCTTGGGGATCATAAGTATTCTAGTTAGCCCAAATGAAATTGCAGTTGATAAGGCCAGTTTCATTAGAGATGTCATTTTCTTCCTTCTCTCTCTGTTAATCCTCCTTGTCATCATTTCCATTGGTAAAATTAGCTTGTTGGGCTCAATCTGCTATGTTTCTATCTACTTCCTTTATGTCTGTGCAGTATCTGCAACACATTTCATCTATGGAGGGGACAAGAAAGATGGCGAATTCACAGCCTCTTCTGATGACATAGTAGAGTCTGGCTTGCCATTGCTGGCCTATGTTGATGAGGAGAAACCAAATTTAGCAAATAAAGTGGCTATTGATCATAAGGAGGAAAGTTTTGATAATGATTCATTTGATTGTACTTACTTGGGCAAGTTTCTTCTACAAGTACTAGAATTACCTCTTTGCTTGCCAAGAAGACTTACTATACCATTAGTGAGTGAGGAGAATTGGTCAAAGCCATATGCAGTTATATCTGTCACATTAGCACCAGTTTTGTTTGCAGCTCTTTGTAATACACAGATGGAAAACATGAGTTCAAGGAGTGGTCTAGTTTCTTACTTAATAGCTGCTTTAATTGGCATTGTTTTTGGGAATATGGCATGTGTGACTACCAAGAGTTCTAGCCCACCAAGAACGTGCTTGTTTCCTTGGCTAGCAGGGGGGTTTTCTATGAGTGTAACATGGACTTATATTATTGCTGAGGAACTGGTTTCTCTTTTGGTTTCAATTGGAAATATCATAGGGGTTAGTCCTTCAATCCTTGGATTAACTGTCCTAGCTTGGGGTAACTCTCTAGGGGATTTGATAGCCAATGGTGCAATGGCCAAGAATGGTGGGGCAGATGGGACCCAAATAGCTGTCTCTGGTTGTTATGCAGGTCCAATGTTTAATATTTTGATGGGTTTGGGCTTGCCTCTTGTTCTATCAGCATGGTCTGAATATCCAGACTCTTATGTCATTCCTAAGGACCCTTCCCTCTTTGGGACACTTTTGTTCTTGATGGTAGGGGTGCTTTGGGCCCTTGTGATATTGGTGAAGAAGAATATGAGGCTTCATAAGTCCTTGGGGGCTGGGCTCTTGACCATATACCTATGTTTTTTGTTTATAAGATTAGCCATGGCTATTGGTTTTCTTAAATTCTAG 1740 0.4052 MAAFISNSKPQPRKKIILLLNVSFLFLLFLFLKAYLHPSNSNFHASTTIFNHARMLSDIRVDGCTDLHKYSNYSSKCLYVKTHLDCRSKGYINYLQIFYCNLGHSPILGHALLVLWLVVLFYLLGDTASNYFCTSIEGLSDILRLSPTIAGVTLLSLGNGAPDFFASVVSFTRSNNGAVGLNSILGGAFFVSSAVLGIISILVSPNEIAVDKASFIRDVIFFLLSLLILLVIISIGKISLLGSICYVSIYFLYVCAVSATHFIYGGDKKDGEFTASSDDIVESGLPLLAYVDEEKPNLANKVAIDHKEESFDNDSFDCTYLGKFLLQVLELPLCLPRRLTIPLVSEENWSKPYAVISVTLAPVLFAALCNTQMENMSSRSGLVSYLIAALIGIVFGNMACVTTKSSSPPRTCLFPWLAGGFSMSVTWTYIIAEELVSLLVSIGNIIGVSPSILGLTVLAWGNSLGDLIANGAMAKNGGADGTQIAVSGCYAGPMFNILMGLGLPLVLSAWSEYPDSYVIPKDPSLFGTLLFLMVGVLWALVILVKKNMRLHKSLGAGLLTIYLCFLFIRLAMAIGFLKF 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2415g00003 579 Pfam Sodium/calcium exchanger protein 114 256 IPR004837 GO:0016020|GO:0055085
Gabi2415g00003 579 Pfam Sodium/calcium exchanger protein 417 570 IPR004837 GO:0016020|GO:0055085
Gabi2415g00003 579 Gene3D - 353 571 IPR044880 -
Gabi2415g00003 579 Gene3D - 145 282 IPR044880 -
Gabi2415g00003 579 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 20 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2415g00003 Gabi-Chr2415 197454 199201 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2415g00003 62 577 Antiporters AT5G17860 53.191 7.43e-179 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2415g00003 K13754 - gmx:100818583 877.085