Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2414g00014 ATGGGGAAAGGAAGAGCACCATGCTGTGACAAGACTCAAGTGAAGAGAGGACCTTGGAGCCCTGCAGAAGACCTTAAACTCATTGCTTTCATCCAGAAACATGGCCATGAAAATTGGCGTTCTCTCCCCAAACAAGCAGGGCTTCTGCGATGTGGGAAAAGTTGTCGTTTGAGATGGATCAATTATCTCAGGCCTGATGTAAAGAGAGGCAATTTTACAATAGAGGAAGAGGAAACCATAATAAGGCTACATAAGGCCTTGGGAAACAAGTGGTCAAAGATTGCATCACGTTTGCCTGGTAGGACTGACAATGAGATCAAGAATGTGTGGAACACACACTTGAAGAAAAGATTGGCTCTGAAAAGTTCAGAGTCAAGTGCAGATGAATCCAAGTTAGAATCATCAATCACTTCCTCATCTTCATCTTCATCTGAGTCATTTTTATCAAATGAGAGACCAAATCTAGCAAAGACTAGTCCTGTAAATGAATTTAATGTGCAAGCTTCCCAAGTGACAATGACAGAGAAAATTGTGCAAGAATCTGAAAAACAAGTATCTAATGAACTTACGATCATTACTGAAGACCCAAAAGAGTCATCAAATTCATTGTCTTGTGTTGAGTCAAATATCTTAAACTCAAACCAGATTGTTGCTTACAAACCAGAACAAGAATTGGCTTGTCCATTAACCTATCTAGGACTTTATGATGTTGACAATACATTACAAGAGGTGGATAAACCAAACAATCTTCTTGAAATACCATGGGAATCAGATTATGATTTTTGGAAGTCATTAGATAACCTTGGATCCTTCCAATCAAATGAAATCCAATCAGAGGAGTTCCCAGCTAGCCAAAGCCTTCATTTTGGAGAAGAGGGTGTTCAAGATGCTGAAGGCATGAAGTGGTCCCAAGACTTTGAGAATGAGTTTGGAGTAGTAGGTGAAACAACTGAGTCAAACAAGGATCAGTTCCTATCAAAGAATTATGCTGTTGCGCCAGAAATGGACCATCAGATACTTGATTTTGATGATATGACAAGGCCAGAATCTGAATTAGACTTTGGTTATATTCAATTATGGCCCTCTTGGCCTCAAAATACTAGCCTTTAA 1110 0.3937 MGKGRAPCCDKTQVKRGPWSPAEDLKLIAFIQKHGHENWRSLPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTIEEEETIIRLHKALGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLALKSSESSADESKLESSITSSSSSSSESFLSNERPNLAKTSPVNEFNVQASQVTMTEKIVQESEKQVSNELTIITEDPKESSNSLSCVESNILNSNQIVAYKPEQELACPLTYLGLYDVDNTLQEVDKPNNLLEIPWESDYDFWKSLDNLGSFQSNEIQSEEFPASQSLHFGEEGVQDAEGMKWSQDFENEFGVVGETTESNKDQFLSKNYAVAPEMDHQILDFDDMTRPESELDFGYIQLWPSWPQNTSL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2414g00014 369 SMART sant 15 65 IPR001005 -
Gabi2414g00014 369 SMART sant 68 116 IPR001005 -
Gabi2414g00014 369 Gene3D - 70 142 - -
Gabi2414g00014 369 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Gabi2414g00014 369 FunFam Transcription factor RAX3 9 69 - -
Gabi2414g00014 369 Gene3D - 16 68 - -
Gabi2414g00014 369 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Gabi2414g00014 369 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Gabi2414g00014 369 CDD SANT 71 114 IPR001005 -
Gabi2414g00014 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Gabi2414g00014 369 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Gabi2414g00014 369 CDD SANT 18 63 IPR001005 -
Gabi2414g00014 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Gabi2414g00014 369 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Gabi2414g00014 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 204 - -
Gabi2414g00014 369 MobiDBLite consensus disorder prediction 129 161 - -
Gabi2414g00014 369 FunFam MYB transcription factor 70 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2414g00014 Gabi-Chr2414 217798 220883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2414g00014 1 272 MYB Transcription Factor Family AT1G79180 46.885 4.25e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2414g00014 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2414g00014 K09422 - gmx:100101836 552.747