Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2414g00012 ATGACTGATCCCTACTGCTCCAATGACTCATTCAATGGTTATTGGTTTGACCTCAATTCTCCATGCCTCTTCTCTTCTTCATCACCATGCTCCAACCCACCATTCTTTTTTCCTTCTAGTTATCATAACTGCACAAGTGGCATCTCTTTTACTCAGTATCAATCTTCACCCTCCTCTCCTCCTCTAAGAGAAGCCCTTCCTCTCCTTAACCTAAGCCCTGCAAGACGTGAAGATCTTGAATCTTCCTTCAGTGCCATGGAAGTGCACAAGGAGAAAGAACTAAGCATATCATCTTGCTCTTTGGATGATGATACTGTAACGGTGGCTTTGCACTTAGGGCTTCCAAGCACAAGTTCAGCTGATTTAGCTTCAAATATATACTCAACTGATATTTCAGAAAAAGAAGAGAAGGTCACCGTTGCTTCTGAGTATCCATCAACTAAAATTAACAGGGGCCAGTATTGGATCCCTACCCCTGCTCAAATTCTGATTGGTCCAACACAGTTCTCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCTCAATATAGAAAGGGGCCAGAATCTCTAAGGGGAACACAGCCAACAGCTATGCTTAGACTTCCTTGCTATTGCTGTGCACAGGGATGCAAGAACAATATTGATCATCCAAGAGCAAAACCACTCAAAGACTTTAGAACTCTTCAAACTCATTATAAGAGAAAGCACGGAATCAAGCCTTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTAAGAGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAGCTCTGGTATTGCTCTTGTGGGTCAGATTTTAAGCACAAAAGATCTCTTAAAGATCATATCAAGGCATTTGGACATGAACATAAAGCTTATGGAATCGACTGTTTTGATCAAGATGATGAAGCTGGCTCTGAAATTGAGCAAGAAAATGAATCTTTCCGCTCATAG 996 0.4167 MTDPYCSNDSFNGYWFDLNSPCLFSSSSPCSNPPFFFPSSYHNCTSGISFTQYQSSPSSPPLREALPLLNLSPARREDLESSFSAMEVHKEKELSISSCSLDDDTVTVALHLGLPSTSSADLASNIYSTDISEKEEKVTVASEYPSTKINRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAQGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGHEHKAYGIDCFDQDDEAGSEIEQENESFRS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2414g00012 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Gabi2414g00012 331 PANTHER ZINC FINGER PROTEIN WIP2 37 328 IPR043584 GO:0003700|GO:0010468
Gabi2414g00012 331 FunFam Zinc finger protein WIP2 222 304 - -
Gabi2414g00012 331 Gene3D Classic Zinc Finger 168 191 - -
Gabi2414g00012 331 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Gabi2414g00012 331 SMART c2h2final6 279 302 IPR013087 -
Gabi2414g00012 331 SMART c2h2final6 253 273 IPR013087 -
Gabi2414g00012 331 SMART c2h2final6 169 191 IPR013087 -
Gabi2414g00012 331 SMART c2h2final6 216 248 IPR013087 -
Gabi2414g00012 331 SUPERFAMILY beta-beta-alpha zinc fingers 235 273 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2414g00012 Gabi-Chr2414 197439 199553 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2414g00012 1 324 C2H2 Transcription Factor Family AT1G51220 59.827 2.06e-131 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2414g00012 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2414g00012 - - gmx:100789416 527.709