Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2411g00001 ATGGCAAAACCATCCACCGCTGAAACCTCCTCCGCCAGCAATGCTCATCCGCCGGCGCCGGCGCCGGCTTCCTCGCCTAAGAGCTGGGCCGACGAAGTAGATGAAGAAACCAACGCAACGCCGAGCTCCGAGACAGCAACCTCGTCGTTCAACATCGATGTATTAACGATCGACGAGAACAAGAAGCCTTCTCCCAAGTTCTTGGACGAGCCTGAAGACTCCAACATCCAAGCGGTTTCGTCCGGCGACACTCCGTACACGTCAGCTACCACCTTCGAAGAATTGAATCTCTCACCGGAGCTTTTGAAGGGACTCTACGTGGAGATGAAGTTCCAGAAACCTAGTAAGATCCAAGTCGTAACCTTGCCTATGATCTTGAATCCTCCGAATAGGGATTTGGTCGCACATGCGCATAACGGTTCCGGAAAAACCACGTGTTTCCTTCTTGGTATGCTTAGTCGAGTTGATCCAAAGTTGCAGGCTCCTCAAGCTTTCTGCATTTGCCCAACCAGGGAGTTGGCTATTCAGAATACTGAAGTTCTCCGAAAGATGGGAAAGTACACGGGGATTAGCTCAGAATGTGCTATACCAGCAGACAGTAGGGATGCTTTGCCGATAGCGAAACGGGCACCGATTATGGCTCAAGTGGTTATTGGGACCCCTGGCACGATTAATATGTGGATGGCTTATAAGAAACTTGGGGTGACAAGGTTGAAGATTCTTGTTTTTGACGAGGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGGAATAGAAAAATTCAATTCTAACTGTCAGGTTCTTCTGTGTTCTGCTACAATCAATGACATTGTCCAGAATTTTGTTTCGGGGACAGTTAAGCAGGATTGTAATACACTTTTTGTGAAGGAACTATCTTTAGATGCCGTAAAACAATATAAAGTTCATTGTCCTGATGAACTCTCTACGATTGAAGTGAAAAAAGTTTACATACTCGAAATAGGAGAGAATCTGGGGCAAACTATAATATTTGTGCACACAAGAAATAGTGCAAAAATGTTACATAAATCACTTGTTGTCGCTCCCGTCGCCCCAAGTAAGGTAGTCGACAAGGGAAAAAGGAAAGTGGTGAACATTGTTAAAAGGAAGGTCCGGTCTGCAGCGGACATTCCTGCCGAGGAGCTTGCTAGGAGGACTAGCGGCCCGGTTATTAAGGATGTGCAGGAGAATGCCAAGAGTTTGGCGGTCAACCCTTCTGCACCTGAAGTTATTCCTCCTAAACCAACGGCTTATGGAAGGAAGACGGTTGCTAGCGAGGATTTAAGCTCGCCTAAAGGAGCTAAAAGGGTTAGGGTGGAGATCAACCCTTCTGCACCTGAAGTTATTCCTCCTTTAGGCGAGCTTAAATCCTCGCTAGCAACCCTCTTCCTTCCAGAAGCCGTTGGTTTAGGAGGAATAACTTCAGGTGCATAA 1476 0.4675 MAKPSTAETSSASNAHPPAPAPASSPKSWADEVDEETNATPSSETATSSFNIDVLTIDENKKPSPKFLDEPEDSNIQAVSSGDTPYTSATTFEELNLSPELLKGLYVEMKFQKPSKIQVVTLPMILNPPNRDLVAHAHNGSGKTTCFLLGMLSRVDPKLQAPQAFCICPTRELAIQNTEVLRKMGKYTGISSECAIPADSRDALPIAKRAPIMAQVVIGTPGTINMWMAYKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKGIEKFNSNCQVLLCSATINDIVQNFVSGTVKQDCNTLFVKELSLDAVKQYKVHCPDELSTIEVKKVYILEIGENLGQTIIFVHTRNSAKMLHKSLVVAPVAPSKVVDKGKRKVVNIVKRKVRSAADIPAEELARRTSGPVIKDVQENAKSLAVNPSAPEVIPPKPTAYGRKTVASEDLSSPKGAKRVRVEINPSAPEVIPPLGELKSSLATLFLPEAVGLGGITSGA 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2411g00001 491 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 90 119 IPR014014 GO:0003724
Gabi2411g00001 491 SMART ultradead3 110 314 IPR014001 -
Gabi2411g00001 491 Pfam DEAD/DEAH box helicase 116 287 IPR011545 GO:0003676|GO:0005524
Gabi2411g00001 491 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 300 IPR014001 -
Gabi2411g00001 491 MobiDBLite consensus disorder prediction 35 55 - -
Gabi2411g00001 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 291 IPR027417 -
Gabi2411g00001 491 MobiDBLite consensus disorder prediction 1 18 - -
Gabi2411g00001 491 PANTHER RNA HELICASE 64 359 - -
Gabi2411g00001 491 MobiDBLite consensus disorder prediction 1 87 - -
Gabi2411g00001 491 Gene3D - 69 303 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2411g00001 Gabi-Chr2411 784 6029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2411g00001 83 477 Eukaryotic Initiation Factors Gene Family AT1G72730 29.736 9.81e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2411g00001 K18655 - qsa:O6P43_010208 506.908