Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2407g00028 ATGGGTCGCGAAACTGTTTTTCTTCCAGCCCCACCAACCCCATCCACCACTGCCATCACCACAGTGAACCCACCACTACCAGCACCAGTGGCAGCATCATCACCATCAGCATCAGCATCAGCAGCACCTACCTCACTTGCTCCTGGGTTCAGGTTTCACCCAACTGACGAGGAGCTTGTTATTTATTACCTAAAGCGCAAGGTTTGTGGGAAAAACTTCCGATTTGATGCCATATCTGAGGTTGATATATACAGGAGCGAGCCCTGGGAACTATCAGATAAATCAAGGTTGAAGACCAGGGACCAAGAATGGTATTTTTTCAGTGCATTGGACAAGAAATATGGGAATGGTGGGAGAATGAACAGGGCTACGAACAAAGGGTACTGGAAAGCCACTGGGAATGATCGCCCAGTTAGGCATGAACAAAGGACTGTGGGGTTGAAGAAAACATTGGTGTTTCATAGTGGCCGAGCTCCAGATGGTAAGAGGACTAATTGGGTCATGCATGAGTACAGGCTTGTTGAGGAAGAGCTTGAGAGGGCTGGGAATGGATCCTCTCAGCCTCAGGATGCTTATGTCTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCAAATGGGCAACGATATGCACCCTTCATTGAAGAGGAGTGGGATGATGCATCAGGAATGATTCCTAGGGCAGAGCCTGTGGATGACGGTTCTGTTGCCCACCATCCATGCGTTGAAGGCAATGGTGGTGTTTTATGCATTGAAGGGAGAAATGATGTTGTACAGGATACTCAGTCTAACAATAAAGTTCCATTTGATGTGAACAAGCTTCCTATAGAAACTCAAAATCTTCTAGCTGTGTGCAAGAGGGAGAGAATGGCTGAGTACCCATCACCTGAAAAGGATAGTAATCGCAAGCATGCGGATGAGGATCCTTCACCCCAAACAGATAATAATCCAAAGCCTTTCTCTCAAATATACAAAAGAAGGCGCAATAACTTGAACTCCAACAACTCTCATGTTTCTGGAGATTCAATCCGAACAAACCAGGATCCATGCTCATCCACAATAACCACTGCTGCAACAACACTCCCGACGACAGCAGCAGCAGCAGCAACAACCACTACCAACGCTGCGCCGAAAAAACATTTTCTGTCTGCACTGGTGGAGTTTTCTCTGCAAGAATCTCTTGAAAATAAGGAAAGTGTTACTCCAGATTTTGATGCTGATAATCTTGACTCATCTGTGCCTCCAAGCTGTGCAAAGTACATCAAACAGTTGCAAAGTGAGATGCAAAAGGTTACTGTTGAAAAGGAGACAATGAGGTTTGAGATGATGAGTGCTCAAGCCATGATCAACATTCTGCAGTCTCGTTTGGACATTCTCAGCAAAGAAAATGAGGAATTGAAGAAAATGGTCGAAAATGCTTAG 1425 0.4519 MGRETVFLPAPPTPSTTAITTVNPPLPAPVAASSPSASASAAPTSLAPGFRFHPTDEELVIYYLKRKVCGKNFRFDAISEVDIYRSEPWELSDKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNKGYWKATGNDRPVRHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEELERAGNGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDASGMIPRAEPVDDGSVAHHPCVEGNGGVLCIEGRNDVVQDTQSNNKVPFDVNKLPIETQNLLAVCKRERMAEYPSPEKDSNRKHADEDPSPQTDNNPKPFSQIYKRRRNNLNSNNSHVSGDSIRTNQDPCSSTITTAATTLPTTAAAAATTTTNAAPKKHFLSALVEFSLQESLENKESVTPDFDADNLDSSVPPSCAKYIKQLQSEMQKVTVEKETMRFEMMSAQAMINILQSRLDILSKENEELKKMVENA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2407g00028 474 Gene3D NAC domain 55 203 IPR036093 GO:0003677|GO:0006355
Gabi2407g00028 474 MobiDBLite consensus disorder prediction 331 350 - -
Gabi2407g00028 474 MobiDBLite consensus disorder prediction 293 322 - -
Gabi2407g00028 474 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 45 340 - -
Gabi2407g00028 474 Pfam No apical meristem (NAM) protein 48 173 IPR003441 GO:0003677|GO:0006355
Gabi2407g00028 474 FunFam Nac domain-containing protein 86 55 203 - -
Gabi2407g00028 474 SUPERFAMILY NAC domain 38 201 IPR036093 GO:0003677|GO:0006355
Gabi2407g00028 474 MobiDBLite consensus disorder prediction 1 23 - -
Gabi2407g00028 474 ProSiteProfiles NAC domain profile. 46 200 IPR003441 GO:0003677|GO:0006355
Gabi2407g00028 474 Coils Coil 422 474 - -
Gabi2407g00028 474 MobiDBLite consensus disorder prediction 293 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2407g00028 Gabi-Chr2407 263715 272758 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2407g00028 294 469 NAC Transcription Factor Family AT3G10480 39.674 7.59e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi2407g00028 NAM 8.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2407g00028 - - gmx:100782028 733.021