Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2407g00026 ATGGCACGGAAATCCTCAACCTCGCTCGCTCCCGGCTTCCGATTCCACCCCACCGACGAAGAGCTCGTCCGATTCTACCTCAAGCGCAAGGTTACCGGAAAATCCTTCCGCGTCGACCCCATCGCCGTCGTCGACGTTTACAAGTTCGAGCCCTGGGATCTTCCCTGTAAGTCGAAGCTGCAGACGAGGGATTTAGAGTGGTACTTCTTCAGCGCGCTGGACAGGAAGTATGGGAACGGTTCGAGGACGAACCGCGCCACCGAGAGAGGGTACTGGAAGACCACCGGCAAGGATCGCGCCGTCAAGCACGGCAACCGGGTTGTTGGAATGAAGAAGACCCTCGTCTACCACTCCGGACGCGCCCCCCGTGGCGCTCGTTCCAATTGGGTGATGCACGAATATAAGTTGGTTGATCAGGAATTGATCCAGGCTGGAGTAGCGCAGGATGCTTTTGTGCTGTGTAGGATTTTCGAGAAGAGTGGTGCTGGGCCCAAGAATGGGGAGAAGTATGGTGCCCCCTTGATTGAGGAGGAATGGGAAAACGATGATGTGCCGGCTGGTGATGATGAGTTTTTCAATGAAGTGTCTGCTGGTGATACTGGTGCTTTTGTTGAAACGGACGACCTTGAGCAGAAGCTTGATATTGATGCTACACTTGGAGGTGCTGATTTTACATCAAACTTCTACCACGGGGAGTGTAGTAGCTATCCTGAGCATTCCCAAGAATTCATAAGCGATCAGAAGCCATTGGCAGGCACTGTTGAAATTTCTGAGCCTCAAAATGATCAACCTTTCAATATGGCTGAGCAATATGGGGTGGACGCCAATTTAGCGAAAGATGGAGACAATGTTGAGTTGAGCCATAATGAGAATCCATTGAATTTCAATTACGCCGTTGATGATCTGGATCCATACTTCAATACCATTGACAATGGATTATTCCTGGAAACCAATGATCTTGGGAATCCGGGTGAGGGTAATTTGAATGAGGAAGACCCTTATGGTATTGGTATGCTAGATGAATATCTTACATACCCTGATGACGACATTTGCAAGTATATATCTTTTGATTCTCCTCCGAGCTTGGAGAGCGAAAACCCTATTTCTGACCAAGGACCACCTTTCATCCAGCAGAATGTGGAGGGAGAAACCAATAATATTTCCATGGCAAGCAAACATGATTTTGAAGCACAATCTAATGATGAAGCTTCTTTAAAGAAGAATCAGCAGGGTTCAAATTCGGTATCAGGAAATACAAATCCATTTGTGAAGCAGGCCCATAAATTGTTGGCCAGCATACCTGCTCCGCCTGCATTTGCTTCAGAGTTTCCTACTAAGGAGATTGCTCTTAGGCTTCATCCTGCAGCTCAGTCTTCCAATTCAGCTCATGTAACTACGGGCATGATGAGCATAACAGACATTACTTTTAGAGGCAATGCGATGGACTGGATGGTAGGCAAGAATGGAGGGTTTAACGCAATAATATCTACTGAGTTTTCTCAGCCTGATGTTAATTCTGCTGGTTTGATGCCTGTTTTTGGCTTGGTCTCTGGCAAGACCGCATTTGTGTTGTCACATGGCTGGATTTTCTTGATGTTTTTTTCGGTTATGATTCTTTCACTGAGTCTAAAGATTGGATGCTTCATGTATACTGGTAAATGA 1662 0.4681 MARKSSTSLAPGFRFHPTDEELVRFYLKRKVTGKSFRVDPIAVVDVYKFEPWDLPCKSKLQTRDLEWYFFSALDRKYGNGSRTNRATERGYWKTTGKDRAVKHGNRVVGMKKTLVYHSGRAPRGARSNWVMHEYKLVDQELIQAGVAQDAFVLCRIFEKSGAGPKNGEKYGAPLIEEEWENDDVPAGDDEFFNEVSAGDTGAFVETDDLEQKLDIDATLGGADFTSNFYHGECSSYPEHSQEFISDQKPLAGTVEISEPQNDQPFNMAEQYGVDANLAKDGDNVELSHNENPLNFNYAVDDLDPYFNTIDNGLFLETNDLGNPGEGNLNEEDPYGIGMLDEYLTYPDDDICKYISFDSPPSLESENPISDQGPPFIQQNVEGETNNISMASKHDFEAQSNDEASLKKNQQGSNSVSGNTNPFVKQAHKLLASIPAPPAFASEFPTKEIALRLHPAAQSSNSAHVTTGMMSITDITFRGNAMDWMVGKNGGFNAIISTEFSQPDVNSAGLMPVFGLVSGKTAFVLSHGWIFLMFFSVMILSLSLKIGCFMYTGK 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2407g00026 553 MobiDBLite consensus disorder prediction 402 420 - -
Gabi2407g00026 553 MobiDBLite consensus disorder prediction 359 378 - -
Gabi2407g00026 553 FunFam Nac domain-containing protein 86 18 162 - -
Gabi2407g00026 553 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 291 - -
Gabi2407g00026 553 MobiDBLite consensus disorder prediction 395 420 - -
Gabi2407g00026 553 Pfam No apical meristem (NAM) protein 11 136 IPR003441 GO:0003677|GO:0006355
Gabi2407g00026 553 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Gabi2407g00026 553 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Gabi2407g00026 553 MobiDBLite consensus disorder prediction 355 378 - -
Gabi2407g00026 553 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2407g00026 Gabi-Chr2407 245641 248958 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2407g00026 1 545 NAC Transcription Factor Family AT5G04410 42.450 3.09e-134 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi2407g00026 NAM 1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2407g00026 - - aprc:113871167 747.658