Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2407g00023 ATGTCAGGAGAGGAAATTTGGTCATCCTGTGAAGAAGAATCTAGTCAAAATCTTCCTCCATTTGATAACAGCAGTGGCTACAATTCAAGAACAGGCATTTATCACCCTCTTGTTAAGCTTGGCAAAAGACATGAAATCCCAACAAAGCCTGACCTTAACACTGCCCATCTTGTGCTGTCACAGTTCCCACCAGCAGACCTTGCTGATGCAAGAATTGCATACATTGATTCAGGTACTAATCGTAGTATAAGCTATGGAGAGGTTCGCAGGTCTGTTTACTCCCTTGGATCAGCTTTGTTCCATGGACTTGGGGTAAGTAAAGGTGATGTGGTGTTTGTATTGTCCCCAAACTCAATAATGTACTCAACCATATGCTTATCAGTGTTATCAGTTGGAGCAATTCTGACAACTGCAAACCCCCTCAATACTGAGTCAGAAATTGCCAAGCAAGTACGTGATTCAGGTGCTAAACTAGCAATTTCAGCACCAGAAGAGCTACACAAATTGGTCCCTACTGGGGTTCCTACAATTCTCACATCTTATCCCTCTGACAGGAAAATGTTATCAGTTGAAGAATTAATAGAAGGATGCTATAATTCACTAGAGTTGCCACAAGTTTCTGTGGCTCAATCAGATACTGCTGCTATACTTTACTCTTCAGGGACTACAGGTGTAAGCAAAGGTGTAGTTTTGACACATGCAAATCTCATTTCCATAATGAGACTACTACTCTGGTCTGCTGATGTAACTGGATCCGTTGATGATGTTTTCTTGGCCTTCATTCCAATGTTTCATGTTTATGGACTGATGTTCTTTGGATTTGGGTTGTTGTGTGTTGGTATTACAACAATTTTGATGCAGAAGTTTGACTTCCAAGCTATGCTTGTTGCTATCCAGAAGTACGAAGTTAATAACTTACCAGCAGTGCCAACAGTGATCCTTACACTAGTAAAACATGCAAGAAAAGCTGGGAGTGACTTATCCAGCCTCAGAAGGGTGGGCTCAGGGGCTGCACCTTTGAGTAAGGAAGTGATTCAGGAGTTTAGAAAGATATTTCCTTGGGTTGAACTAAGGACAGGTTATGGGCTAACAGAAAGTTCTGGTGCAGCAACATTTTTTGTGTCAGATAAAGATGCTAAAGCTCACCCAGACGCATGTGGGAAGCTGCTTCCAACTTTTTGTGCAAAAGTGATAGACATTGAAACTGGGAAGCCTTTGCCTCCTCACAAGGAAGGAGAGTTATGGCTGAATGGTCCTTGTATTATGAAAGGATATCTAGGAAATTTGGAGGCAACAACTTCAACACTTGATTCGGAAGGTTGGTTGAGGACAGGTGATCTTGGTTATATTGACGAGAATGGATTTGTTTGTGTAGTTGAAAGAATAAAGGAGCTAATCAAGCACAATGGGTATCAGGTGGCTCCAGCAGAACTGGAATCTGTGCTGCTAAGTCATCCCCTTATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCATATGTGGTGAGAGCAGTTGGTTCTGAACTCTCAGAAGACCAAGTCATTCAATTTGTCGCAGGCCAGGTGGCCCCATATAAGAAAGTGAGAAGGGTGAGTTTCATTGACACTATTCCAAAGTCAGCTGCTGGCAAGATATTGCGCAAGGATCTTGTTTCTCAAAGCAAATATCAACTTGTCTCCAAGTTATGA 1713 0.4209 MSGEEIWSSCEEESSQNLPPFDNSSGYNSRTGIYHPLVKLGKRHEIPTKPDLNTAHLVLSQFPPADLADARIAYIDSGTNRSISYGEVRRSVYSLGSALFHGLGVSKGDVVFVLSPNSIMYSTICLSVLSVGAILTTANPLNTESEIAKQVRDSGAKLAISAPEELHKLVPTGVPTILTSYPSDRKMLSVEELIEGCYNSLELPQVSVAQSDTAAILYSSGTTGVSKGVVLTHANLISIMRLLLWSADVTGSVDDVFLAFIPMFHVYGLMFFGFGLLCVGITTILMQKFDFQAMLVAIQKYEVNNLPAVPTVILTLVKHARKAGSDLSSLRRVGSGAAPLSKEVIQEFRKIFPWVELRTGYGLTESSGAATFFVSDKDAKAHPDACGKLLPTFCAKVIDIETGKPLPPHKEGELWLNGPCIMKGYLGNLEATTSTLDSEGWLRTGDLGYIDENGFVCVVERIKELIKHNGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVRAVGSELSEDQVIQFVAGQVAPYKKVRRVSFIDTIPKSAAGKILRKDLVSQSKYQLVSKL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2407g00023 570 CDD 4CL 46 558 - -
Gabi2407g00023 570 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 47 560 - -
Gabi2407g00023 570 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Gabi2407g00023 570 Pfam AMP-binding enzyme 71 467 IPR000873 -
Gabi2407g00023 570 Gene3D - 42 463 IPR042099 -
Gabi2407g00023 570 MobiDBLite consensus disorder prediction 7 24 - -
Gabi2407g00023 570 SUPERFAMILY Acetyl-CoA synthetase-like 68 561 - -
Gabi2407g00023 570 Gene3D - 464 566 IPR045851 -
Gabi2407g00023 570 FunFam 4-coumarate--CoA ligase 2 464 565 - -
Gabi2407g00023 570 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
Gabi2407g00023 570 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2407g00023 Gabi-Chr2407 211616 213704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2407g00023 25 566 Monolignol Biosynthesis Gene Families AT4G05160 43.376 3.64e-149 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2407g00023 K10526 - gmx:100783104 950.658