Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2407g00014 ATGACAGATTTTCAGCCGCTACAGCAGAAGCCTGAACCTGCTGATGCCCACACCGAGTTTGAGCATGGACTGGACGATTTTATGCACGGGCAGTTGGATGATTGTATGTCATTTGATACATGTAGCTCCTCCCGTGCACCTGATGAAGAGGATGATGAGGGTGATCAGCTGGTTCGGAGGAGGCGGAGGTCTGATCTTGAGGGGGATGATTTAGCAGAGTCATCGGCTGCACGGAGGCGTCATTCACGGATTTTAAGCAGATGGGCTGCCCGGCAGGCTCAGGAGATGATAACTACTATTGAGAGGAGGAATCGAGAGTCTGAGTTGATGGCGCTTGCAGGATTACATACGGTCTCAATGTTGGACTCCTCTTTTCTGAGGGGATCACAATCTCCAACTTCTGGCCAGGAGGGGGCTGTGGAGAGGCCAAGCACTCAGGCATCTGCCATTCTGCAGATGTGGCGTGAATTGGAGGATGAACATTTGCTGAATCGGGCACGGGAAAGGATGAGGGAAAGGTTGCGACAGCAAAGGAGTTCTGACTCTAATACCAACGTGTCCAGTGCCATGTCTGATAGTCGAGGAAGTGAGAATCAAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCACATGGTCAGGTTGGATCTCGGAATGCACATGGGGATCATAATGGATCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTGAGACAAATTGTTCGGGGATGGATGGAAAGTGGCATTAGTGATCATTCATCTAATGTGAGTCAGAGAAACAATAACCGTAGAGCAGAATGGCTTGGAGAAACAGAGCGTGAGCGGGTAAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAGCAGAGAGCTTCACGCGGGAGCCGGAGGGATGCTCAAGTAAGTGAAGGTGCTCAAGTTGATCGAGTCCGTGATGTGGTAGCTGATCATGATGAGGGCCAGGCAGAGCATGTTCGGCGGGACATGCTGAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTGAGGATAGAAAGGGAAAGACAAAGAGAGCTGCAGGGCTTGTTGGAGCACCGAGCTGTTTCTGATTTTGCTCATCGCAACCGTATTCAGTCATTGCTCAGAGGTAGATTCCTCCGAAATGAAAGCACTGTTGAAGAAGAGAGGCCTCCGTCTATGGCTGCAAGTGAATTGGTTCAGTTAAGACAACGACACACAGTTTCTGGTTTAAGGGACGGGTTTCGTTCAAGATTAGAAAATATTGTTCGTGGTCAAGCAGGCACCAATCCTGATGCCACATCAAATAGTAACATAAGTGAAACAAGAAGCGATGAGAACCAAGCAAACATTCTGATAGATGACCAACAAGAAAATTATGGACAAGAGCAGATTAGGAGCCTGGAAAATGATGTGATTCAGTTGCCTACTCATACAGGAACTTTGGAGAGTAGCACAAGTGAGACTATTAGTTGGCAAGAAGTTAGTAACCAAGGAGGGAATTGGCAGGATCAAATTACTGAAGATGGGGGAGGAGACTGGCAGCAGAGAGCTTATGGTCCATTCAATCAGCTGAGAGATGGAAGGGAAGTCAGTGATTGGCAACAGGAAACTCCCCAAAATTTAGCTGGGGAGGAAGATCCGCATCCACAGGAAGCTCAAAGAATTTGGCATGAGGATAGTACGAGGGAAGCTGTTGGTAATTGGTCCGAAGGACCTTCTGGAGCTTCAAGGAATCGCCGTGGTGTTCCTTTTAGAAGATTCAATAGATTTCATCCACCCGACGATGATAATGTGTACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTTCGCAGTGGATTCCGTGAAAGTTTGGACCAACTAATACAGTCATATGTGGAAAGGCAAGGTCGTGCACCAATTGACTGGGATTTGCACCGGAACTTGCCAACACCAACTCCTGCCTCACCTGAACGGGACCTTGATCAGCAGGGTGATGAACGCAATGAAGGTCAGCATGAAGCAGTTAACAGACCTTCACTGGTGTTGCCTTCACCACCAGTGCCTCCTCCACAACCATTATGGCACCAAGATTTGCATCAAACTGGATGGTCTCGCCAAAGCATGCATCGATCTGAAATTGAGTGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGCTGCAGCGTTCTGTCAGACAGGAAGTCTCTGCTGCTCTGAACCGCTCAGCTGGTGAAAATGGATTAGGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAACCATATCGATTCGCTTTTGTACAGATGCGGACACATGTGCACTTGTTCAAAATGTGCTAATGAGTTAGTTCGTGGTGGAGGTAAGTGTCCTTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA 2562 0.4778 MTDFQPLQQKPEPADAHTEFEHGLDDFMHGQLDDCMSFDTCSSSRAPDEEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARERMRERLRQQRSSDSNTNVSSAMSDSRGSENQGSLGDASESENDYGTWSHGQVGSRNAHGDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMTSQQRASRGSRRDAQVSEGAQVDRVRDVVADHDEGQAEHVRRDMLRLRGRQALVDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNESTVEEERPPSMAASELVQLRQRHTVSGLRDGFRSRLENIVRGQAGTNPDATSNSNISETRSDENQANILIDDQQENYGQEQIRSLENDVIQLPTHTGTLESSTSETISWQEVSNQGGNWQDQITEDGGGDWQQRAYGPFNQLRDGREVSDWQQETPQNLAGEEDPHPQEAQRIWHEDSTREAVGNWSEGPSGASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPERDLDQQGDERNEGQHEAVNRPSLVLPSPPVPPPQPLWHQDLHQTGWSRQSMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVVRAYSIL 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2407g00014 853 ProSiteProfiles Zinc finger RING-type profile. 801 840 IPR001841 -
Gabi2407g00014 853 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 853 - -
Gabi2407g00014 853 SUPERFAMILY RING/U-box 800 846 - -
Gabi2407g00014 853 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 785 851 IPR013083 -
Gabi2407g00014 853 MobiDBLite consensus disorder prediction 435 458 - -
Gabi2407g00014 853 MobiDBLite consensus disorder prediction 505 530 - -
Gabi2407g00014 853 MobiDBLite consensus disorder prediction 1 78 - -
Gabi2407g00014 853 MobiDBLite consensus disorder prediction 172 244 - -
Gabi2407g00014 853 MobiDBLite consensus disorder prediction 125 146 - -
Gabi2407g00014 853 CDD mRING-HC-C3HC5_NEU1 798 850 - -
Gabi2407g00014 853 MobiDBLite consensus disorder prediction 44 78 - -
Gabi2407g00014 853 MobiDBLite consensus disorder prediction 671 685 - -
Gabi2407g00014 853 MobiDBLite consensus disorder prediction 228 244 - -
Gabi2407g00014 853 MobiDBLite consensus disorder prediction 542 564 - -
Gabi2407g00014 853 Pfam Zinc finger, C3HC4 type (RING finger) 798 845 - -
Gabi2407g00014 853 Coils Coil 730 750 - -
Gabi2407g00014 853 MobiDBLite consensus disorder prediction 179 227 - -
Gabi2407g00014 853 MobiDBLite consensus disorder prediction 654 708 - -
Gabi2407g00014 853 MobiDBLite consensus disorder prediction 505 521 - -
Gabi2407g00014 853 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2407g00014 Gabi-Chr2407 132158 138882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2407g00014 783 847 C3H Transcription Factor Family AT3G06140 37.879 1.28e-06 49.7