Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2405g00026 ATGGGGAAGAAGAAGGTGGAGATGAAGCGAATCGAGGACAAAAGCAGACGGTTAGTAACTTTCTCGAAGAGGCGGAAGGGATTGATGAAGAAAGCTCGCGAGTTGTCTGTTCTCTGCGATGCGAAGGTAGCGCTCGTCATCTTCTCTCGCCCCGGGAAGCTCTACGAGTGCTGCAACGGTGACAGTTTGGCCAAGGTCCTCCGGCAATACTTGGATCATTTAGGAGCAAGCGGTACAGACTCAAAGCCGGAACTCCGCTTTGAAATTGCAGATATTCGGTCTGATGCAGCGTTTTCTAAATTGGTAAAAAGGCGCTTTGGTGTTTGTGAACTTGAGCATCTCAGTGTGACTGACCTTACGGAACTAGAGAAATTGATTCATACTGCACTTTCGCAAATCAGATCAGCAAAGATGCGAATGATGATGGAGTATGTAATGAACCTTAAGAAAAAGGAGCTGATCCTGAGAAAAGAAAATGAGCTTTTGGAGAAACAGGTAAAGTTGTAA 507 0.4576 MGKKKVEMKRIEDKSRRLVTFSKRRKGLMKKARELSVLCDAKVALVIFSRPGKLYECCNGDSLAKVLRQYLDHLGASGTDSKPELRFEIADIRSDAAFSKLVKRRFGVCELEHLSVTDLTELEKLIHTALSQIRSAKMRMMMEYVMNLKKKELILRKENELLEKQVKL 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2405g00026 168 ProSiteProfiles K-box domain profile. 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2405g00026 168 Coils Coil 145 165 - -
Gabi2405g00026 168 Pfam K-box region 79 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2405g00026 168 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Gabi2405g00026 168 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 141 - -
Gabi2405g00026 168 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Gabi2405g00026 168 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Gabi2405g00026 168 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi2405g00026 168 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2405g00026 168 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2405g00026 168 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2405g00026 168 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2405g00026 Gabi-Chr2405 327403 340291 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2405g00026 1 167 MADS-box Gene Family AT1G26310 40.571 1.66e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2405g00026 K-box 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2405g00026 - K09264 gmx:100804540 245.358