Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2405g00012 ATGGATTCTCCTATTTCTTCTGTTTCTGGATCTCCGACTGGCCCTAAGTCAGATCCTCCTACTTTTGCCAATTATATCCTTGCTCCGCTTAGTATGGATAAATTGGATGGCTCAAACTACGATTCATGGTCTTCAGATCTGATTCCACCTAAACCTTCTACGTCATCAGCACTTGTTATGCCCAATGTTTCTTCTGATTTGGGAACTCTGGACACGCTGCTCAAGAACAACGGCACCTTCTCGGAACCCCAACTGGCGACGGTGGCGCGTCAGGTGCTTAGCGGGCTTAGCTACCTCCACGCGCACAAGATCATACACCGCGACATAAAGCCGTCGAACCTTCTTGTGAATGGGAAGATGAAGGTGAAGATCGGCGATTTCGGTGTGAGCAAGAGGCTTCTTTATGAGCTATTAAGGAAACTGGATGCAGAACTAAAGCATGAAGTTTTCCATTGGGCTGCATATTATCTTGAGCAAAGATTCTTCTGTGGTTATCCAGTACCTTTGGTGTTAGCTCAGAATTAG 525 0.4629 MDSPISSVSGSPTGPKSDPPTFANYILAPLSMDKLDGSNYDSWSSDLIPPKPSTSSALVMPNVSSDLGTLDTLLKNNGTFSEPQLATVARQVLSGLSYLHAHKIIHRDIKPSNLLVNGKMKVKIGDFGVSKRLLYELLRKLDAELKHEVFHWAAYYLEQRFFCGYPVPLVLAQN 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2405g00012 174 MobiDBLite consensus disorder prediction 1 20 - -
Gabi2405g00012 174 Pfam Protein kinase domain 56 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2405g00012 174 MobiDBLite consensus disorder prediction 1 18 - -
Gabi2405g00012 174 ProSiteProfiles Protein kinase domain profile. 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2405g00012 174 ProSitePatterns Serine/Threonine protein kinases active-site signature. 104 116 IPR008271 GO:0004672|GO:0006468
Gabi2405g00012 174 SUPERFAMILY Protein kinase-like (PK-like) 66 136 IPR011009 -
Gabi2405g00012 174 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 66 133 - -
Gabi2405g00012 174 Gene3D Transferase(Phosphotransferase) domain 1 50 157 - -
Gabi2405g00012 174 SMART serkin_6 24 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2405g00012 Gabi-Chr2405 175247 179565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2405g00012 66 137 MAP Kinase Kinase Gene Family AT1G73500 59.722 7.36e-20 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gabi2405g00012 Pkinase 8.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2405g00012 K20604 - qsa:O6P43_005229 115.931